Analysis of interatomic Contacts of Structural Units in PDB entry:
7E8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7E8Q entry

There are 4 chains in PDB entry 7E8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 480
B	MET 1	ILE 480
C	MET 1	ILE 480
D	MET 1	SER 482

There are 96 helices in PDB entry 7E8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	12	Right-handed alpha
Helix 2	AA2	A	34	48	Right-handed alpha
Helix 3	AA3	A	49	52	Right-handed 310
Helix 4	AA4	A	53	57	Right-handed alpha
Helix 5	AA5	A	70	72	Right-handed 310
Helix 6	AA6	A	76	94	Right-handed alpha
Helix 7	AA7	A	102	109	Right-handed alpha
Helix 8	AA8	A	110	116	Right-handed alpha
Helix 9	AA9	A	117	123	Right-handed alpha
Helix 10	AB1	A	132	146	Right-handed alpha
Helix 11	AB2	A	163	169	Right-handed 310
Helix 12	AB3	A	195	198	Right-handed 310
Helix 13	AB4	A	212	215	Right-handed 310
Helix 14	AB5	A	246	250	Right-handed 310
Helix 15	AB6	A	276	315	Right-handed alpha
Helix 16	AB7	A	320	347	Right-handed alpha
Helix 17	AB8	A	359	386	Right-handed alpha
Helix 18	AB9	A	387	390	Right-handed 310
Helix 19	AC1	A	394	400	Right-handed alpha
Helix 20	AC2	A	403	411	Right-handed alpha
Helix 21	AC3	A	419	434	Right-handed alpha
Helix 22	AC4	A	434	447	Right-handed alpha
Helix 23	AC5	A	450	463	Right-handed alpha
Helix 24	AC6	A	471	479	Right-handed alpha
Helix 25	AC7	B	4	12	Right-handed alpha
Helix 26	AC8	B	34	47	Right-handed alpha
Helix 27	AC9	B	48	50	Right-handed 310
Helix 28	AD1	B	53	57	Right-handed alpha
Helix 29	AD2	B	70	72	Right-handed 310
Helix 30	AD3	B	76	94	Right-handed alpha
Helix 31	AD4	B	102	107	Right-handed alpha
Helix 32	AD5	B	110	116	Right-handed alpha
Helix 33	AD6	B	117	123	Right-handed alpha
Helix 34	AD7	B	132	146	Right-handed alpha
Helix 35	AD8	B	195	198	Right-handed 310
Helix 36	AD9	B	212	215	Right-handed 310
Helix 37	AE1	B	246	250	Right-handed 310
Helix 38	AE2	B	276	315	Right-handed alpha
Helix 39	AE3	B	320	347	Right-handed alpha
Helix 40	AE4	B	359	386	Right-handed alpha
Helix 41	AE5	B	387	390	Right-handed 310
Helix 42	AE6	B	394	400	Right-handed alpha
Helix 43	AE7	B	402	411	Right-handed alpha
Helix 44	AE8	B	419	433	Right-handed alpha
Helix 45	AE9	B	434	447	Right-handed alpha
Helix 46	AF1	B	450	463	Right-handed alpha
Helix 47	AF2	B	471	479	Right-handed alpha
Helix 48	AF3	C	4	12	Right-handed alpha
Helix 49	AF4	C	34	48	Right-handed alpha
Helix 50	AF5	C	49	52	Right-handed 310
Helix 51	AF6	C	53	57	Right-handed alpha
Helix 52	AF7	C	70	72	Right-handed 310
Helix 53	AF8	C	76	94	Right-handed alpha
Helix 54	AF9	C	102	109	Right-handed alpha
Helix 55	AG1	C	110	116	Right-handed alpha
Helix 56	AG2	C	117	123	Right-handed alpha
Helix 57	AG3	C	132	147	Right-handed alpha
Helix 58	AG4	C	164	168	Right-handed 310
Helix 59	AG5	C	195	198	Right-handed 310
Helix 60	AG6	C	212	215	Right-handed 310
Helix 61	AG7	C	246	250	Right-handed 310
Helix 62	AG8	C	276	315	Right-handed alpha
Helix 63	AG9	C	320	347	Right-handed alpha
Helix 64	AH1	C	359	386	Right-handed alpha
Helix 65	AH2	C	387	390	Right-handed 310
Helix 66	AH3	C	394	399	Right-handed alpha
Helix 67	AH4	C	403	411	Right-handed alpha
Helix 68	AH5	C	417	433	Right-handed alpha
Helix 69	AH6	C	434	447	Right-handed alpha
Helix 70	AH7	C	450	463	Right-handed alpha
Helix 71	AH8	C	471	479	Right-handed alpha
Helix 72	AH9	D	4	12	Right-handed alpha
Helix 73	AI1	D	34	48	Right-handed alpha
Helix 74	AI2	D	49	52	Right-handed 310
Helix 75	AI3	D	53	57	Right-handed alpha
Helix 76	AI4	D	70	72	Right-handed 310
Helix 77	AI5	D	76	94	Right-handed alpha
Helix 78	AI6	D	102	109	Right-handed alpha
Helix 79	AI7	D	110	116	Right-handed alpha
Helix 80	AI8	D	117	123	Right-handed alpha
Helix 81	AI9	D	132	146	Right-handed alpha
Helix 82	AJ1	D	163	170	Right-handed 310
Helix 83	AJ2	D	195	198	Right-handed 310
Helix 84	AJ3	D	212	215	Right-handed 310
Helix 85	AJ4	D	246	250	Right-handed 310
Helix 86	AJ5	D	279	315	Right-handed alpha
Helix 87	AJ6	D	320	347	Right-handed alpha
Helix 88	AJ7	D	359	386	Right-handed alpha
Helix 89	AJ8	D	387	390	Right-handed 310
Helix 90	AJ9	D	394	400	Right-handed alpha
Helix 91	AK1	D	403	411	Right-handed alpha
Helix 92	AK2	D	419	433	Right-handed alpha
Helix 93	AK3	D	434	447	Right-handed alpha
Helix 94	AK4	D	450	463	Right-handed alpha
Helix 95	AK5	D	468	470	Right-handed 310
Helix 96	AK6	D	471	479	Right-handed alpha

There are 16 sheets in PDB entry 7E8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	17	20	anti-parallel
Strand 3	A	228	232	parallel
Strand 4	A	254	265	anti-parallel
Strand 5	A	182	193	anti-parallel
Strand 6	A	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	153	first strand
Strand 2	A	200	203	parallel
Strand 3	A	217	222	anti-parallel
Strand 4	A	269	272	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	17	20	anti-parallel
Strand 3	B	228	232	parallel
Strand 4	B	254	265	anti-parallel
Strand 5	B	182	193	anti-parallel
Strand 6	B	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	200	203	parallel
Strand 3	B	217	222	anti-parallel
Strand 4	B	269	272	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	17	20	anti-parallel
Strand 3	C	228	232	parallel
Strand 4	C	254	265	anti-parallel
Strand 5	C	182	193	anti-parallel
Strand 6	C	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	200	203	parallel
Strand 3	C	217	222	anti-parallel
Strand 4	C	269	272	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	18	20	anti-parallel
Strand 3	D	228	232	parallel
Strand 4	D	254	265	anti-parallel
Strand 5	D	182	193	anti-parallel
Strand 6	D	174	178	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	153	first strand
Strand 2	D	200	203	parallel
Strand 3	D	217	222	anti-parallel
Strand 4	D	269	272	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	356	357	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7E8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
7E8Q