Analysis of interatomic Contacts of Structural Units in PDB entry:
7E9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E9D entry

There are 2 chains in PDB entry 7E9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5LEU 447
B
 GLN 5LEU 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 7E9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
19 22Right-handed 310
Helix 3
AA3
A
23 44Right-handed alpha
Helix 4
AA4
A
47 61Right-handed alpha
Helix 5
AA5
A
76 90Right-handed alpha
Helix 6
AA6
A
103 117Right-handed alpha
Helix 7
AA7
A
118 119Right-handed 310
Helix 8
AA8
A
120 122Right-handed 310
Helix 9
AA9
A
123 143Right-handed alpha
Helix 10
AB1
A
144 150Right-handed alpha
Helix 11
AB2
A
152 170Right-handed alpha
Helix 12
AB3
A
173 186Right-handed alpha
Helix 13
AB4
A
191 195Right-handed 310
Helix 14
AB5
A
198 220Right-handed alpha
Helix 15
AB6
A
234 240Right-handed alpha
Helix 16
AB7
A
241 249Right-handed alpha
Helix 17
AB8
A
272 274Right-handed 310
Helix 18
AB9
A
275 290Right-handed alpha
Helix 19
AC1
A
318 323Right-handed alpha
Helix 20
AC2
A
325 335Right-handed alpha
Helix 21
AC3
A
340 344Right-handed 310
Helix 22
AC4
A
350 358Right-handed alpha
Helix 23
AC5
A
388 390Right-handed 310
Helix 24
AC6
A
409 418Right-handed alpha
Helix 25
AC7
A
422 435Right-handed alpha
Helix 26
AC8
A
437 446Right-handed alpha
Helix 27
AC9
B
6 17Right-handed alpha
Helix 28
AD1
B
19 22Right-handed 310
Helix 29
AD2
B
23 44Right-handed alpha
Helix 30
AD3
B
47 61Right-handed alpha
Helix 31
AD4
B
76 90Right-handed alpha
Helix 32
AD5
B
103 117Right-handed alpha
Helix 33
AD6
B
118 119Right-handed 310
Helix 34
AD7
B
120 122Right-handed 310
Helix 35
AD8
B
123 142Right-handed alpha
Helix 36
AD9
B
144 150Right-handed alpha
Helix 37
AE1
B
152 157Right-handed alpha
Helix 38
AE2
B
157 170Right-handed alpha
Helix 39
AE3
B
173 186Right-handed alpha
Helix 40
AE4
B
191 195Right-handed 310
Helix 41
AE5
B
198 220Right-handed alpha
Helix 42
AE6
B
234 240Right-handed alpha
Helix 43
AE7
B
241 249Right-handed alpha
Helix 44
AE8
B
272 274Right-handed 310
Helix 45
AE9
B
275 290Right-handed alpha
Helix 46
AF1
B
318 323Right-handed alpha
Helix 47
AF2
B
325 335Right-handed alpha
Helix 48
AF3
B
340 345Right-handed 310
Helix 49
AF4
B
350 358Right-handed alpha
Helix 50
AF5
B
409 418Right-handed alpha
Helix 51
AF6
B
422 435Right-handed alpha
Helix 52
AF7
B
437 446Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7E9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
298 303parallel
Strand 3
A
381 386anti-parallel
Strand 4
A
392 397anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
264 265anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 364first strand
Strand 2
B
296 303parallel
Strand 3
B
381 387anti-parallel
Strand 4
B
392 397anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il