Analysis of interatomic Contacts of Structural Units in PDB entry:
7E9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7E9H entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7E9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASN 41	HIS 848
S	ASN 41	HIS 848
A	SER 6	TYR 354
B	ASN 35	ASN 340
C	LYS 29	GLU 47
D	VAL 2	LEU 247

There are 54 helices in PDB entry 7E9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	74	92	Right-handed alpha
Helix 2	AA2	R	111	127	Right-handed alpha
Helix 3	AA3	R	158	170	Right-handed alpha
Helix 4	AA4	R	183	188	Right-handed 310
Helix 5	AA5	R	201	216	Right-handed alpha
Helix 6	AA6	R	230	246	Right-handed alpha
Helix 7	AA7	R	263	275	Right-handed alpha
Helix 8	AA8	R	286	300	Right-handed alpha
Helix 9	AA9	R	341	350	Right-handed alpha
Helix 10	AB1	R	359	370	Right-handed alpha
Helix 11	AB2	R	403	428	Right-handed alpha
Helix 12	AB3	R	435	439	Right-handed 310
Helix 13	AB4	R	442	452	Right-handed alpha
Helix 14	AB5	R	458	460	Right-handed 310
Helix 15	AB6	R	588	612	Right-handed alpha
Helix 16	AB7	R	615	621	Right-handed alpha
Helix 17	AB8	R	622	644	Right-handed alpha
Helix 18	AB9	R	648	687	Right-handed alpha
Helix 19	AC1	R	695	721	Right-handed alpha
Helix 20	AC2	R	748	775	Right-handed alpha
Helix 21	AC3	R	784	811	Right-handed alpha
Helix 22	AC4	R	814	848	Right-handed alpha
Helix 23	AC5	S	76	92	Right-handed alpha
Helix 24	AC6	S	111	123	Right-handed alpha
Helix 25	AC7	S	158	172	Right-handed alpha
Helix 26	AC8	S	183	187	Right-handed 310
Helix 27	AC9	S	201	216	Right-handed alpha
Helix 28	AD1	S	227	245	Right-handed alpha
Helix 29	AD2	S	265	274	Right-handed alpha
Helix 30	AD3	S	286	299	Right-handed alpha
Helix 31	AD4	S	311	315	Right-handed 310
Helix 32	AD5	S	320	327	Right-handed alpha
Helix 33	AD6	S	341	349	Right-handed alpha
Helix 34	AD7	S	360	370	Right-handed alpha
Helix 35	AD8	S	405	428	Right-handed alpha
Helix 36	AD9	S	435	439	Right-handed 310
Helix 37	AE1	S	442	451	Right-handed alpha
Helix 38	AE2	S	585	587	Right-handed 310
Helix 39	AE3	S	588	612	Right-handed alpha
Helix 40	AE4	S	615	619	Right-handed 310
Helix 41	AE5	S	623	644	Right-handed alpha
Helix 42	AE6	S	648	682	Right-handed alpha
Helix 43	AE7	S	696	720	Right-handed alpha
Helix 44	AE8	S	749	774	Right-handed alpha
Helix 45	AE9	S	783	800	Right-handed alpha
Helix 46	AF1	S	800	808	Right-handed alpha
Helix 47	AF2	S	813	836	Right-handed alpha
Helix 48	AF3	S	838	848	Right-handed alpha
Helix 49	AF4	A	7	31	Right-handed alpha
Helix 50	AF5	A	241	255	Right-handed alpha
Helix 51	AF6	A	270	281	Right-handed alpha
Helix 52	AF7	A	296	306	Right-handed alpha
Helix 53	AF8	A	331	350	Right-handed alpha
Helix 54	AF9	D	28	32	Right-handed 310

There are 28 sheets in PDB entry 7E9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	43	45	first strand
Strand 2	R	103	107	anti-parallel
Strand 3	R	50	55	parallel
Strand 4	R	150	154	parallel
Strand 5	R	176	178	parallel
Strand 6	R	195	197	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	58	60	first strand
Strand 2	R	67	70	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	249	256	first strand
Strand 2	R	220	226	parallel
Strand 3	R	281	283	parallel
Strand 4	R	308	310	parallel
Strand 5	R	331	334	parallel
Strand 6	R	475	481	anti-parallel
Strand 7	R	488	495	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	455	456	first strand
Strand 2	R	462	463	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	530	532	first strand
Strand 2	R	541	543	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	564	566	first strand
Strand 2	R	573	575	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	43	45	first strand
Strand 2	S	101	107	anti-parallel
Strand 3	S	49	50	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	43	45	first strand
Strand 2	S	101	107	anti-parallel
Strand 3	S	52	55	parallel
Strand 4	S	153	154	parallel
Strand 5	S	176	177	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	249	255	first strand
Strand 2	S	220	225	parallel
Strand 3	S	280	283	parallel
Strand 4	S	307	309	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	331	336	first strand
Strand 2	S	475	481	anti-parallel
Strand 3	S	488	491	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	530	533	first strand
Strand 2	S	540	543	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	564	565	first strand
Strand 2	S	574	575	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	188	first strand
Strand 2	A	197	200	anti-parallel
Strand 3	A	36	40	parallel
Strand 4	A	220	225	parallel
Strand 5	A	263	268	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	69	72	anti-parallel
Strand 3	B	80	83	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	138	139	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	168	170	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	21	25	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	117	119	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	49	51	anti-parallel
Strand 3	D	33	35	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	38	39	anti-parallel
Strand 3	D	93	94	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	81	82	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	244	245	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	212	216	anti-parallel
Strand 3	D	203	207	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	187	190	anti-parallel
Strand 3	D	175	179	anti-parallel
Strand 4	D	226	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7E9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
7E9H