Analysis of interatomic Contacts of Structural Units in PDB entry:
7EAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EAP entry

There is 1 chain in PDB entry 7EAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25GLN 779
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7EAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
35 47Right-handed alpha
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
62 64Right-handed 310
Helix 5
AA5
A
73 85Right-handed alpha
Helix 6
AA6
A
95 114Right-handed alpha
Helix 7
AA7
A
140 146Right-handed alpha
Helix 8
AA8
A
149 167Right-handed alpha
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
195 212Right-handed alpha
Helix 11
AB2
A
228 232Right-handed 310
Helix 12
AB3
A
240 248Right-handed alpha
Helix 13
AB4
A
248 257Right-handed alpha
Helix 14
AB5
A
279 284Right-handed alpha
Helix 15
AB6
A
302 310Right-handed alpha
Helix 16
AB7
A
320 329Right-handed alpha
Helix 17
AB8
A
342 345Right-handed 310
Helix 18
AB9
A
346 353Right-handed alpha
Helix 19
AC1
A
357 376Right-handed alpha
Helix 20
AC2
A
386 388Right-handed 310
Helix 21
AC3
A
389 394Right-handed alpha
Helix 22
AC4
A
396 411Right-handed alpha
Helix 23
AC5
A
434 437Right-handed 310
Helix 24
AC6
A
449 453Right-handed 310
Helix 25
AC7
A
456 466Right-handed alpha
Helix 26
AC8
A
486 496Right-handed alpha
Helix 27
AC9
A
536 546Right-handed alpha
Helix 28
AD1
A
565 570Right-handed alpha
Helix 29
AD2
A
582 592Right-handed alpha
Helix 30
AD3
A
608 612Right-handed 310
Helix 31
AD4
A
741 743Right-handed 310
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There are 9 sheets in PDB entry 7EAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
87 89parallel
Strand 3
A
121 124parallel
Strand 4
A
171 172parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
263 266parallel
Strand 3
A
296 298parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
274 275anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 416first strand
Strand 2
A
572 577anti-parallel
Strand 3
A
551 557parallel
Strand 4
A
499 505parallel
Strand 5
A
428 432parallel
Strand 6
A
470 474parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 631first strand
Strand 2
A
637 638anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 665first strand
Strand 2
A
680 689anti-parallel
Strand 3
A
669 670anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 665first strand
Strand 2
A
680 689anti-parallel
Strand 3
A
731 739anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 675first strand
Strand 2
A
770 778parallel
Strand 3
A
757 764anti-parallel
Strand 4
A
696 706anti-parallel
Strand 5
A
717 726anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
745 746first strand
Strand 2
A
752 753anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il