Analysis of interatomic Contacts of Structural Units in PDB entry:
7EB2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EB2 entry

There are 6 chains in PDB entry 7EB2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	SER 2	ASN 340
Y	THR 6	ARG 62
N	VAL 2	LEU 247
C	GLU 166	THR 862
D	PRO 55	ARG 748

There are 73 helices in PDB entry 7EB2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	31	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	62	88	Right-handed alpha
Helix 4	AA4	A	101	116	Right-handed alpha
Helix 5	AA5	A	120	133	Right-handed alpha
Helix 6	AA6	A	133	139	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed alpha
Helix 8	AA8	A	151	158	Right-handed alpha
Helix 9	AA9	A	158	163	Right-handed alpha
Helix 10	AB1	A	171	179	Right-handed alpha
Helix 11	AB2	A	211	216	Right-handed 310
Helix 12	AB3	A	228	230	Right-handed 310
Helix 13	AB4	A	241	255	Right-handed alpha
Helix 14	AB5	A	270	279	Right-handed alpha
Helix 15	AB6	A	282	286	Right-handed 310
Helix 16	AB7	A	295	309	Right-handed alpha
Helix 17	AB8	A	329	351	Right-handed alpha
Helix 18	AB9	B	3	24	Right-handed alpha
Helix 19	AC1	B	29	33	Right-handed 310
Helix 20	AC2	Y	7	23	Right-handed alpha
Helix 21	AC3	Y	29	44	Right-handed alpha
Helix 22	AC4	Y	45	48	Right-handed 310
Helix 23	AC5	N	28	32	Right-handed 310
Helix 24	AC6	N	74	76	Right-handed 310
Helix 25	AC7	N	87	91	Right-handed 310
Helix 26	AC8	N	220	224	Right-handed 310
Helix 27	AC9	C	184	202	Right-handed alpha
Helix 28	AD1	C	221	234	Right-handed alpha
Helix 29	AD2	C	246	257	Right-handed alpha
Helix 30	AD3	C	271	276	Right-handed 310
Helix 31	AD4	C	289	291	Right-handed 310
Helix 32	AD5	C	292	305	Right-handed alpha
Helix 33	AD6	C	316	331	Right-handed alpha
Helix 34	AD7	C	347	357	Right-handed alpha
Helix 35	AD8	C	367	382	Right-handed alpha
Helix 36	AD9	C	411	419	Right-handed alpha
Helix 37	AE1	C	442	454	Right-handed alpha
Helix 38	AE2	C	457	461	Right-handed 310
Helix 39	AE3	C	463	465	Right-handed 310
Helix 40	AE4	C	466	485	Right-handed alpha
Helix 41	AE5	C	503	515	Right-handed alpha
Helix 42	AE6	C	588	616	Right-handed alpha
Helix 43	AE7	C	620	624	Right-handed 310
Helix 44	AE8	C	626	643	Right-handed alpha
Helix 45	AE9	C	644	649	Right-handed alpha
Helix 46	AF1	C	658	691	Right-handed alpha
Helix 47	AF2	C	706	732	Right-handed alpha
Helix 48	AF3	C	768	791	Right-handed alpha
Helix 49	AF4	C	801	826	Right-handed alpha
Helix 50	AF5	C	829	860	Right-handed alpha
Helix 51	AF6	D	70	92	Right-handed alpha
Helix 52	AF7	D	109	123	Right-handed alpha
Helix 53	AF8	D	135	146	Right-handed alpha
Helix 54	AF9	D	147	150	Right-handed 310
Helix 55	AG1	D	160	165	Right-handed 310
Helix 56	AG2	D	182	193	Right-handed alpha
Helix 57	AG3	D	205	219	Right-handed alpha
Helix 58	AG4	D	236	245	Right-handed alpha
Helix 59	AG5	D	256	270	Right-handed alpha
Helix 60	AG6	D	303	311	Right-handed alpha
Helix 61	AG7	D	334	346	Right-handed alpha
Helix 62	AG8	D	354	375	Right-handed alpha
Helix 63	AG9	D	392	404	Right-handed alpha
Helix 64	AH1	D	478	506	Right-handed alpha
Helix 65	AH2	D	509	515	Right-handed alpha
Helix 66	AH3	D	516	533	Right-handed alpha
Helix 67	AH4	D	534	539	Right-handed alpha
Helix 68	AH5	D	547	584	Right-handed alpha
Helix 69	AH6	D	594	619	Right-handed alpha
Helix 70	AH7	D	652	678	Right-handed alpha
Helix 71	AH8	D	679	682	Right-handed 310
Helix 72	AH9	D	688	713	Right-handed alpha
Helix 73	AI1	D	716	747	Right-handed alpha

There are 22 sheets in PDB entry 7EB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	115	119	parallel
Strand 3	N	92	99	anti-parallel
Strand 4	N	33	40	anti-parallel
Strand 5	N	44	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	140	142	first strand
Strand 2	N	155	161	anti-parallel
Strand 3	N	211	216	anti-parallel
Strand 4	N	203	208	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	194	195	first strand
Strand 2	N	186	190	anti-parallel
Strand 3	N	174	179	anti-parallel
Strand 4	N	226	231	anti-parallel
Strand 5	N	243	244	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	216	first strand
Strand 2	C	168	175	parallel
Strand 3	C	239	243	parallel
Strand 4	C	263	266	parallel
Strand 5	C	283	285	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	343	first strand
Strand 2	C	308	314	parallel
Strand 3	C	361	365	parallel
Strand 4	C	389	393	parallel
Strand 5	C	423	427	parallel
Strand 6	C	536	542	anti-parallel
Strand 7	C	547	554	anti-parallel
Strand 8	C	559	560	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	520	first strand
Strand 2	C	523	526	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	753	754	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	740	first strand
Strand 2	C	757	762	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	105	first strand
Strand 2	D	56	62	parallel
Strand 3	D	129	132	parallel
Strand 4	D	152	155	parallel
Strand 5	D	172	174	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	232	first strand
Strand 2	D	197	203	parallel
Strand 3	D	250	254	parallel
Strand 4	D	278	280	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	319	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	435	443	anti-parallel
Strand 4	D	448	450	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	410	first strand
Strand 2	D	413	418	anti-parallel
Strand 3	D	421	422	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	474	first strand
Strand 2	D	640	647	parallel
Strand 3	D	624	627	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EB2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EB2