Analysis of interatomic Contacts of Structural Units in PDB entry:
7EB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EB9 entry

There are 3 chains in PDB entry 7EB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 371
B
 LYS 452ASN 505
C
 ALA 446ASN 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7EB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
A
137 139Right-handed 310
Helix 6
AA6
A
222 235Right-handed alpha
Helix 7
AA7
A
237 239Right-handed 310
Helix 8
AA8
A
322 335Right-handed alpha
Helix 9
AA9
A
337 341Right-handed 310
Helix 10
AB1
A
356 360Right-handed 310
Helix 11
AB2
B
453 503Right-handed alpha
Helix 12
AB3
C
447 503Right-handed alpha
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There are 4 sheets in PDB entry 7EB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 44anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
166 171parallel
Strand 4
A
141 145anti-parallel
Strand 5
A
148 149anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
266 271parallel
Strand 4
A
241 245anti-parallel
Strand 5
A
248 249anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 317first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
366 369parallel
Strand 4
A
343 344anti-parallel
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