Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EBC entry

There are 4 chains in PDB entry 7EBC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	GLY 533
B	ASN 10	SER 536
C	ASN 10	GLN 532
D	ASN 10	SER 536

There are112 helices in PDB entry 7EBC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	31	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	43	49	Right-handed alpha
Helix 4	AA4	A	59	79	Right-handed alpha
Helix 5	AA5	A	89	97	Right-handed alpha
Helix 6	AA6	A	106	114	Right-handed alpha
Helix 7	AA7	A	130	155	Right-handed alpha
Helix 8	AA8	A	159	167	Right-handed alpha
Helix 9	AA9	A	186	201	Right-handed alpha
Helix 10	AB1	A	227	245	Right-handed alpha
Helix 11	AB2	A	256	260	Right-handed 310
Helix 12	AB3	A	268	275	Right-handed 310
Helix 13	AB4	A	285	296	Right-handed alpha
Helix 14	AB5	A	299	315	Right-handed alpha
Helix 15	AB6	A	318	330	Right-handed alpha
Helix 16	AB7	A	334	346	Right-handed alpha
Helix 17	AB8	A	353	366	Right-handed alpha
Helix 18	AB9	A	388	400	Right-handed alpha
Helix 19	AC1	A	401	403	Right-handed 310
Helix 20	AC2	A	414	427	Right-handed alpha
Helix 21	AC3	A	443	448	Right-handed alpha
Helix 22	AC4	A	449	462	Right-handed alpha
Helix 23	AC5	A	472	493	Right-handed alpha
Helix 24	AC6	A	493	501	Right-handed alpha
Helix 25	AC7	A	501	509	Right-handed alpha
Helix 26	AC8	A	510	513	Right-handed 310
Helix 27	AC9	A	514	520	Right-handed alpha
Helix 28	AD1	A	520	532	Right-handed alpha
Helix 29	AD2	B	11	31	Right-handed alpha
Helix 30	AD3	B	32	36	Right-handed 310
Helix 31	AD4	B	43	49	Right-handed alpha
Helix 32	AD5	B	59	79	Right-handed alpha
Helix 33	AD6	B	89	97	Right-handed alpha
Helix 34	AD7	B	106	114	Right-handed alpha
Helix 35	AD8	B	130	156	Right-handed alpha
Helix 36	AD9	B	159	167	Right-handed alpha
Helix 37	AE1	B	186	201	Right-handed alpha
Helix 38	AE2	B	227	245	Right-handed alpha
Helix 39	AE3	B	256	260	Right-handed 310
Helix 40	AE4	B	268	275	Right-handed 310
Helix 41	AE5	B	285	296	Right-handed alpha
Helix 42	AE6	B	299	315	Right-handed alpha
Helix 43	AE7	B	318	329	Right-handed alpha
Helix 44	AE8	B	334	346	Right-handed alpha
Helix 45	AE9	B	353	366	Right-handed alpha
Helix 46	AF1	B	388	400	Right-handed alpha
Helix 47	AF2	B	401	403	Right-handed 310
Helix 48	AF3	B	414	427	Right-handed alpha
Helix 49	AF4	B	443	448	Right-handed alpha
Helix 50	AF5	B	449	462	Right-handed alpha
Helix 51	AF6	B	472	493	Right-handed alpha
Helix 52	AF7	B	493	501	Right-handed alpha
Helix 53	AF8	B	501	509	Right-handed alpha
Helix 54	AF9	B	510	513	Right-handed 310
Helix 55	AG1	B	514	520	Right-handed alpha
Helix 56	AG2	B	520	532	Right-handed alpha
Helix 57	AG3	C	11	31	Right-handed alpha
Helix 58	AG4	C	32	36	Right-handed 310
Helix 59	AG5	C	43	49	Right-handed alpha
Helix 60	AG6	C	59	79	Right-handed alpha
Helix 61	AG7	C	89	97	Right-handed alpha
Helix 62	AG8	C	106	114	Right-handed alpha
Helix 63	AG9	C	130	155	Right-handed alpha
Helix 64	AH1	C	159	167	Right-handed alpha
Helix 65	AH2	C	186	201	Right-handed alpha
Helix 66	AH3	C	227	245	Right-handed alpha
Helix 67	AH4	C	256	260	Right-handed 310
Helix 68	AH5	C	268	275	Right-handed 310
Helix 69	AH6	C	285	296	Right-handed alpha
Helix 70	AH7	C	299	315	Right-handed alpha
Helix 71	AH8	C	318	329	Right-handed alpha
Helix 72	AH9	C	334	346	Right-handed alpha
Helix 73	AI1	C	353	366	Right-handed alpha
Helix 74	AI2	C	388	400	Right-handed alpha
Helix 75	AI3	C	401	403	Right-handed 310
Helix 76	AI4	C	414	427	Right-handed alpha
Helix 77	AI5	C	443	448	Right-handed alpha
Helix 78	AI6	C	449	462	Right-handed alpha
Helix 79	AI7	C	472	493	Right-handed alpha
Helix 80	AI8	C	493	501	Right-handed alpha
Helix 81	AI9	C	501	509	Right-handed alpha
Helix 82	AJ1	C	510	513	Right-handed 310
Helix 83	AJ2	C	514	520	Right-handed alpha
Helix 84	AJ3	C	520	532	Right-handed alpha
Helix 85	AJ4	D	11	31	Right-handed alpha
Helix 86	AJ5	D	32	36	Right-handed 310
Helix 87	AJ6	D	43	49	Right-handed alpha
Helix 88	AJ7	D	59	79	Right-handed alpha
Helix 89	AJ8	D	89	97	Right-handed alpha
Helix 90	AJ9	D	106	114	Right-handed alpha
Helix 91	AK1	D	130	155	Right-handed alpha
Helix 92	AK2	D	159	167	Right-handed alpha
Helix 93	AK3	D	186	201	Right-handed alpha
Helix 94	AK4	D	227	245	Right-handed alpha
Helix 95	AK5	D	256	260	Right-handed 310
Helix 96	AK6	D	268	275	Right-handed 310
Helix 97	AK7	D	285	296	Right-handed alpha
Helix 98	AK8	D	299	315	Right-handed alpha
Helix 99	AK9	D	318	329	Right-handed alpha
Helix 100	AL1	D	334	346	Right-handed alpha
Helix 101	AL2	D	353	366	Right-handed alpha
Helix 102	AL3	D	388	400	Right-handed alpha
Helix 103	AL4	D	401	403	Right-handed 310
Helix 104	AL5	D	414	427	Right-handed alpha
Helix 105	AL6	D	443	448	Right-handed alpha
Helix 106	AL7	D	449	462	Right-handed alpha
Helix 107	AL8	D	472	493	Right-handed alpha
Helix 108	AL9	D	493	501	Right-handed alpha
Helix 109	AM1	D	501	509	Right-handed alpha
Helix 110	AM2	D	510	513	Right-handed 310
Helix 111	AM3	D	514	520	Right-handed alpha
Helix 112	AM4	D	520	533	Right-handed alpha

There are 12 sheets in PDB entry 7EBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	465	470	parallel
Strand 3	A	433	437	parallel
Strand 4	A	405	408	parallel
Strand 5	A	250	255	parallel
Strand 6	A	204	208	parallel
Strand 7	A	176	179	parallel
Strand 8	A	103	105	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	262	263	parallel
Strand 3	A	383	384	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	465	470	parallel
Strand 3	B	433	437	parallel
Strand 4	B	405	408	parallel
Strand 5	B	250	255	parallel
Strand 6	B	204	208	parallel
Strand 7	B	176	179	parallel
Strand 8	B	103	105	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	262	263	parallel
Strand 3	B	383	384	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	465	470	parallel
Strand 3	C	433	437	parallel
Strand 4	C	405	408	parallel
Strand 5	C	250	255	parallel
Strand 6	C	204	208	parallel
Strand 7	C	176	179	parallel
Strand 8	C	103	105	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	262	263	parallel
Strand 3	C	383	384	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	316	317	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	465	470	parallel
Strand 3	D	433	437	parallel
Strand 4	D	405	408	parallel
Strand 5	D	250	255	parallel
Strand 6	D	204	208	parallel
Strand 7	D	176	179	parallel
Strand 8	D	103	105	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	262	263	parallel
Strand 3	D	383	384	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	278	first strand
Strand 2	D	316	317	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EBC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBC