Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EBD entry

There are 2 chains in PDB entry 7EBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 157ALA 314
B
 GLY 157ALA 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7EBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 171Right-handed alpha
Helix 2
AA2
A
171 182Right-handed alpha
Helix 3
AA3
A
183 185Right-handed 310
Helix 4
AA4
A
209 221Right-handed alpha
Helix 5
AA5
A
256 265Right-handed alpha
Helix 6
AA6
A
276 300Right-handed alpha
Helix 7
AA7
A
301 307Right-handed alpha
Helix 8
AA8
B
158 171Right-handed alpha
Helix 9
AA9
B
171 182Right-handed alpha
Helix 10
AB1
B
183 186Right-handed 310
Helix 11
AB2
B
209 221Right-handed alpha
Helix 12
AB3
B
256 265Right-handed alpha
Helix 13
AB4
B
276 300Right-handed alpha
Helix 14
AB5
B
301 307Right-handed alpha
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There are 3 sheets in PDB entry 7EBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 192anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
247 252anti-parallel
Strand 4
A
195 200parallel
Strand 5
A
308 310parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 228first strand
Strand 2
B
237 244anti-parallel
Strand 3
B
247 252anti-parallel
Strand 4
B
195 200parallel
Strand 5
B
308 310parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il