Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EBG entry

There are 2 chains in PDB entry 7EBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 20ILE 397
B
 VAL 20TYR 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7EBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
36 42Right-handed alpha
Helix 3
AA3
A
51 73Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
82 101Right-handed alpha
Helix 6
AA6
A
102 105Right-handed 310
Helix 7
AA7
A
109 127Right-handed alpha
Helix 8
AA8
A
129 145Right-handed alpha
Helix 9
AA9
A
148 181Right-handed alpha
Helix 10
AB1
A
200 220Right-handed alpha
Helix 11
AB2
A
244 267Right-handed alpha
Helix 12
AB3
A
299 304Right-handed alpha
Helix 13
AB4
A
305 308Right-handed 310
Helix 14
AB5
A
332 344Right-handed alpha
Helix 15
AB6
A
379 388Right-handed alpha
Helix 16
AB7
B
21 29Right-handed alpha
Helix 17
AB8
B
36 43Right-handed alpha
Helix 18
AB9
B
51 75Right-handed alpha
Helix 19
AC1
B
76 81Right-handed alpha
Helix 20
AC2
B
82 101Right-handed alpha
Helix 21
AC3
B
102 105Right-handed 310
Helix 22
AC4
B
109 128Right-handed alpha
Helix 23
AC5
B
129 142Right-handed alpha
Helix 24
AC6
B
152 181Right-handed alpha
Helix 25
AC7
B
200 220Right-handed alpha
Helix 26
AC8
B
244 267Right-handed alpha
Helix 27
AC9
B
299 301Right-handed 310
Helix 28
AD1
B
302 307Right-handed alpha
Helix 29
AD2
B
332 344Right-handed alpha
Helix 30
AD3
B
379 386Right-handed alpha
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There are 4 sheets in PDB entry 7EBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
240 243anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 231first strand
Strand 2
A
276 282parallel
Strand 3
A
286 292anti-parallel
Strand 4
A
357 365anti-parallel
Strand 5
A
347 353anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 199first strand
Strand 2
B
240 243anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 231first strand
Strand 2
B
276 282parallel
Strand 3
B
286 293anti-parallel
Strand 4
B
357 365anti-parallel
Strand 5
B
347 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il