Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EBI entry

There is 1 chain in PDB entry 7EBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1HIS 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7EBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 97Right-handed alpha
Helix 2
AA2
A
98 101Right-handed 310
Helix 3
AA3
A
104 107Right-handed 310
Helix 4
AA4
A
130 137Right-handed alpha
Helix 5
AA5
A
142 147Right-handed alpha
Helix 6
AA6
A
187 191Right-handed 310
Helix 7
AA7
A
203 213Right-handed alpha
Helix 8
AA8
A
225 230Right-handed alpha
Helix 9
AA9
A
231 234Right-handed 310
Helix 10
AB1
A
257 265Right-handed alpha
Helix 11
AB2
A
266 277Right-handed alpha
Helix 12
AB3
A
278 287Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
309 317Right-handed alpha
Helix 15
AB6
A
318 321Right-handed 310
Helix 16
AB7
A
323 335Right-handed alpha
Helix 17
AB8
A
363 380Right-handed alpha
Helix 18
AB9
A
390 400Right-handed alpha
Helix 19
AC1
A
416 425Right-handed alpha
Helix 20
AC2
A
426 430Right-handed 310
Helix 21
AC3
A
444 453Right-handed alpha
Helix 22
AC4
A
459 478Right-handed alpha
Helix 23
AC5
A
517 524Right-handed alpha
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There are 5 sheets in PDB entry 7EBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 173first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
195 199anti-parallel
Strand 4
A
3 7parallel
Strand 5
A
218 219parallel
Strand 6
A
491 493anti-parallel
Strand 7
A
237 239anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
48 51anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
109 116anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
481 487anti-parallel
Strand 3
A
243 251anti-parallel
Strand 4
A
405 409anti-parallel
Strand 5
A
355 358parallel
Strand 6
A
384 387parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
527 528anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il