Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EBP entry

There are 2 chains in PDB entry 7EBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27TRP 552
B
 LYS 31PHE 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7EBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
58 68Right-handed alpha
Helix 3
AA3
A
80 91Right-handed alpha
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
113 121Right-handed alpha
Helix 6
AA6
A
174 189Right-handed alpha
Helix 7
AA7
A
212 216Right-handed 310
Helix 8
AA8
A
238 244Right-handed 310
Helix 9
AA9
A
261 265Right-handed 310
Helix 10
AB1
A
266 268Right-handed 310
Helix 11
AB2
A
269 274Right-handed alpha
Helix 12
AB3
A
283 288Right-handed alpha
Helix 13
AB4
A
289 313Right-handed alpha
Helix 14
AB5
A
314 317Right-handed 310
Helix 15
AB6
A
318 355Right-handed alpha
Helix 16
AB7
A
357 359Right-handed 310
Helix 17
AB8
A
374 378Right-handed 310
Helix 18
AB9
A
385 390Right-handed alpha
Helix 19
AC1
A
415 424Right-handed alpha
Helix 20
AC2
A
428 433Right-handed alpha
Helix 21
AC3
A
440 445Right-handed alpha
Helix 22
AC4
A
466 470Right-handed 310
Helix 23
AC5
A
510 512Right-handed 310
Helix 24
AC6
A
513 531Right-handed alpha
Helix 25
AC7
B
43 47Right-handed 310
Helix 26
AC8
B
58 68Right-handed alpha
Helix 27
AC9
B
80 91Right-handed alpha
Helix 28
AD1
B
93 98Right-handed alpha
Helix 29
AD2
B
113 121Right-handed alpha
Helix 30
AD3
B
174 189Right-handed alpha
Helix 31
AD4
B
212 216Right-handed 310
Helix 32
AD5
B
238 244Right-handed 310
Helix 33
AD6
B
261 265Right-handed 310
Helix 34
AD7
B
266 268Right-handed 310
Helix 35
AD8
B
269 274Right-handed alpha
Helix 36
AD9
B
282 288Right-handed 310
Helix 37
AE1
B
289 314Right-handed alpha
Helix 38
AE2
B
315 317Right-handed 310
Helix 39
AE3
B
318 355Right-handed alpha
Helix 40
AE4
B
357 359Right-handed 310
Helix 41
AE5
B
374 378Right-handed 310
Helix 42
AE6
B
385 390Right-handed alpha
Helix 43
AE7
B
415 424Right-handed alpha
Helix 44
AE8
B
428 434Right-handed alpha
Helix 45
AE9
B
440 447Right-handed alpha
Helix 46
AF1
B
466 470Right-handed 310
Helix 47
AF2
B
510 512Right-handed 310
Helix 48
AF3
B
513 531Right-handed alpha
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There are 8 sheets in PDB entry 7EBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
124 129parallel
Strand 3
A
196 201parallel
Strand 4
A
33 39parallel
Strand 5
A
361 367parallel
Strand 6
A
393 396anti-parallel
Strand 7
A
69 71anti-parallel
Strand 8
A
405 407parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
411 412parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
166 170anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 461first strand
Strand 2
A
473 477anti-parallel
Strand 3
A
481 486anti-parallel
Strand 4
A
491 496anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
124 129parallel
Strand 3
B
196 201parallel
Strand 4
B
33 39parallel
Strand 5
B
361 367parallel
Strand 6
B
393 396anti-parallel
Strand 7
B
69 71anti-parallel
Strand 8
B
405 407parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
411 412parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
166 170anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 461first strand
Strand 2
B
473 478anti-parallel
Strand 3
B
481 486anti-parallel
Strand 4
B
491 496anti-parallel
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