Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EBW entry

There are 4 chains in PDB entry 7EBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0MET 218
B
 VAL -2MET 218
C
 LYS 3MET 218
D
 HIS -1VAL 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7EBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
41 44Right-handed 310
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
69 82Right-handed alpha
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
108 122Right-handed alpha
Helix 7
AA7
A
129 150Right-handed alpha
Helix 8
AA8
A
161 173Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
203 218Right-handed alpha
Helix 12
AB3
B
12 25Right-handed alpha
Helix 13
AB4
B
41 44Right-handed 310
Helix 14
AB5
B
45 52Right-handed alpha
Helix 15
AB6
B
69 82Right-handed alpha
Helix 16
AB7
B
91 108Right-handed alpha
Helix 17
AB8
B
108 122Right-handed alpha
Helix 18
AB9
B
129 150Right-handed alpha
Helix 19
AC1
B
161 173Right-handed alpha
Helix 20
AC2
B
183 195Right-handed alpha
Helix 21
AC3
B
198 203Right-handed alpha
Helix 22
AC4
B
203 218Right-handed alpha
Helix 23
AC5
C
12 26Right-handed alpha
Helix 24
AC6
C
27 31Right-handed 310
Helix 25
AC7
C
41 44Right-handed 310
Helix 26
AC8
C
45 52Right-handed alpha
Helix 27
AC9
C
69 82Right-handed alpha
Helix 28
AD1
C
91 108Right-handed alpha
Helix 29
AD2
C
108 122Right-handed alpha
Helix 30
AD3
C
129 150Right-handed alpha
Helix 31
AD4
C
161 173Right-handed alpha
Helix 32
AD5
C
183 195Right-handed alpha
Helix 33
AD6
C
198 203Right-handed alpha
Helix 34
AD7
C
203 217Right-handed alpha
Helix 35
AD8
D
12 26Right-handed alpha
Helix 36
AD9
D
27 31Right-handed 310
Helix 37
AE1
D
37 44Right-handed 310
Helix 38
AE2
D
45 52Right-handed alpha
Helix 39
AE3
D
69 82Right-handed alpha
Helix 40
AE4
D
91 108Right-handed alpha
Helix 41
AE5
D
108 122Right-handed alpha
Helix 42
AE6
D
129 150Right-handed alpha
Helix 43
AE7
D
161 173Right-handed alpha
Helix 44
AE8
D
183 195Right-handed alpha
Helix 45
AE9
D
198 203Right-handed alpha
Helix 46
AF1
D
203 217Right-handed alpha
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There are 4 sheets in PDB entry 7EBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
5 8parallel
Strand 3
A
59 62anti-parallel
Strand 4
A
65 67anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
5 8parallel
Strand 3
B
59 62anti-parallel
Strand 4
B
65 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
5 8parallel
Strand 3
C
59 62anti-parallel
Strand 4
C
65 67anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
5 8parallel
Strand 3
D
59 62anti-parallel
Strand 4
D
65 67anti-parallel
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