Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EBZ entry

There are 6 chains in PDB entry 7EBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	PRO 291
C	GLY 1	GLN 247
B	TYR 9	THR 247
D	ASN 27	LEU 67
E	GLN 1	ALA 119
F	ASP 1	ARG 108

There are 24 helices in PDB entry 7EBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	38	43	Right-handed alpha
Helix 3	AA3	A	54	57	Right-handed 310
Helix 4	AA4	A	58	63	Right-handed alpha
Helix 5	AA5	A	100	108	Right-handed alpha
Helix 6	AA6	A	160	164	Right-handed 310
Helix 7	AA7	C	43	48	Right-handed alpha
Helix 8	AA8	C	62	66	Right-handed 310
Helix 9	AA9	C	97	104	Right-handed alpha
Helix 10	AB1	C	143	148	Right-handed alpha
Helix 11	AB2	C	242	247	Right-handed 310
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	B	43	47	Right-handed 310
Helix 14	AB5	B	83	87	Right-handed 310
Helix 15	AB6	B	89	99	Right-handed alpha
Helix 16	AB7	B	142	147	Right-handed alpha
Helix 17	AB8	B	157	161	Right-handed 310
Helix 18	AB9	B	166	173	Right-handed 310
Helix 19	AC1	D	34	38	Right-handed 310
Helix 20	AC2	D	49	54	Right-handed alpha
Helix 21	AC3	E	28	32	Right-handed 310
Helix 22	AC4	E	62	65	Right-handed 310
Helix 23	AC5	E	87	91	Right-handed 310
Helix 24	AC6	F	79	83	Right-handed 310

There are 17 sheets in PDB entry 7EBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	D	46	47	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	C	162	163	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	76	first strand
Strand 2	A	233	251	anti-parallel
Strand 3	A	110	127	anti-parallel
Strand 4	A	193	194	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	76	first strand
Strand 2	A	233	251	anti-parallel
Strand 3	A	110	127	anti-parallel
Strand 4	A	180	184	anti-parallel
Strand 5	C	22	23	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	94	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	142	148	anti-parallel
Strand 4	A	169	174	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	210	218	anti-parallel
Strand 3	C	68	71	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	210	218	anti-parallel
Strand 3	C	113	119	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	191	201	anti-parallel
Strand 3	C	126	134	anti-parallel
Strand 4	C	151	156	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	223	227	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	25	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	185	190	parallel
Strand 3	B	101	111	anti-parallel
Strand 4	B	226	240	anti-parallel
Strand 5	B	64	71	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	78	82	anti-parallel
Strand 3	B	207	218	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	175	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	93	97	anti-parallel
Strand 5	E	113	114	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	106	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	44	49	anti-parallel
Strand 3	F	34	38	anti-parallel
Strand 4	F	85	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EBZ