Analysis of interatomic Contacts of Structural Units in PDB entry:
7ED5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ED5 entry

There are 6 chains in PDB entry 7ED5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4THR 929
B
 ASN 43ASN 192
C
 LYS 2GLU 73
D
 LEU 38ALA 191
I
 G 13 U 32
J
 C 24 C 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 7ED5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed alpha
Helix 2
AA2
A
76 90Right-handed alpha
Helix 3
AA3
A
123 133Right-handed alpha
Helix 4
AA4
A
139 148Right-handed alpha
Helix 5
AA5
A
155 159Right-handed 310
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
175 177Right-handed 310
Helix 8
AA8
A
178 200Right-handed alpha
Helix 9
AA9
A
206 210Right-handed 310
Helix 10
AB1
A
234 248Right-handed alpha
Helix 11
AB2
A
249 256Right-handed 310
Helix 12
AB3
A
275 287Right-handed alpha
Helix 13
AB4
A
297 301Right-handed 310
Helix 14
AB5
A
304 318Right-handed alpha
Helix 15
AB6
A
322 326Right-handed 310
Helix 16
AB7
A
367 377Right-handed alpha
Helix 17
AB8
A
377 384Right-handed alpha
Helix 18
AB9
A
416 426Right-handed alpha
Helix 19
AC1
A
448 454Right-handed alpha
Helix 20
AC2
A
455 459Right-handed 310
Helix 21
AC3
A
465 480Right-handed alpha
Helix 22
AC4
A
489 493Right-handed 310
Helix 23
AC5
A
505 509Right-handed 310
Helix 24
AC6
A
511 519Right-handed alpha
Helix 25
AC7
A
520 532Right-handed alpha
Helix 26
AC8
A
561 573Right-handed alpha
Helix 27
AC9
A
596 607Right-handed alpha
Helix 28
AD1
A
627 639Right-handed alpha
Helix 29
AD2
A
647 663Right-handed alpha
Helix 30
AD3
A
686 697Right-handed alpha
Helix 31
AD4
A
699 708Right-handed alpha
Helix 32
AD5
A
711 715Right-handed 310
Helix 33
AD6
A
717 733Right-handed alpha
Helix 34
AD7
A
738 744Right-handed alpha
Helix 35
AD8
A
745 752Right-handed alpha
Helix 36
AD9
A
768 773Right-handed alpha
Helix 37
AE1
A
778 790Right-handed alpha
Helix 38
AE2
A
795 799Right-handed 310
Helix 39
AE3
A
833 842Right-handed alpha
Helix 40
AE4
A
858 866Right-handed alpha
Helix 41
AE5
A
867 872Right-handed 310
Helix 42
AE6
A
874 903Right-handed alpha
Helix 43
AE7
A
912 916Right-handed 310
Helix 44
AE8
A
917 923Right-handed alpha
Helix 45
AE9
B
46 51Right-handed alpha
Helix 46
AF1
B
54 94Right-handed alpha
Helix 47
AF2
B
95 99Right-handed 310
Helix 48
AF3
B
103 108Right-handed alpha
Helix 49
AF4
B
119 125Right-handed alpha
Helix 50
AF5
B
134 142Right-handed alpha
Helix 51
AF6
C
3 7Right-handed alpha
Helix 52
AF7
C
8 20Right-handed alpha
Helix 53
AF8
C
25 41Right-handed alpha
Helix 54
AF9
C
44 56Right-handed alpha
Helix 55
AG1
C
68 72Right-handed 310
Helix 56
AG2
D
48 82Right-handed alpha
Helix 57
AG3
D
83 99Right-handed alpha
Helix 58
AG4
D
101 112Right-handed alpha
Helix 59
AG5
D
134 141Right-handed alpha
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There are 10 sheets in PDB entry 7ED5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
56 59anti-parallel
Strand 3
A
65 74anti-parallel
Strand 4
A
110 119anti-parallel
Strand 5
A
98 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 38first strand
Strand 2
A
43 50anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
223 224anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
342 347anti-parallel
Strand 3
A
327 331anti-parallel
Strand 4
B
115 116anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
334 335anti-parallel
Strand 3
A
362 363parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
666 669parallel
Strand 4
A
672 674anti-parallel
Strand 5
A
397 400anti-parallel
Strand 6
A
386 390anti-parallel
Strand 7
B
127 132parallel
Strand 8
B
184 190anti-parallel
Strand 9
B
154 160anti-parallel
Strand 10
B
146 147anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
843 844anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 755first strand
Strand 2
A
762 767anti-parallel
Strand 3
A
612 617anti-parallel
Strand 4
A
800 802anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 822first strand
Strand 2
A
825 831anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 130first strand
Strand 2
D
186 190anti-parallel
Strand 3
D
154 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il