Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EDA entry

There are 21 chains in PDB entry 7EDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	ALA 344
B	GLY 2	ARG 505
C	ALA 23	ASP 473
D	ARG 12	PRO 335
D	GLU 337	LEU 352
E	THR 4	LEU 83
F	SER 12	ARG 45
H	ALA 2	LYS 63
I	GLU 2	PRO 32
J	GLY 5	LEU 40
K	LYS 10	ARG 46
L	GLN 8	ASN 37
M	VAL 3	GLN 32
O	THR 6	PRO 245
T	GLU 2	THR 30
U	LEU 9	LYS 104
V	ALA 1	TYR 137
Y	ALA 20	LEU 46
X	THR 2	ARG 39
Z	THR 2	VAL 61
R	ASP 2	ASP 2

There are114 helices in PDB entry 7EDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed alpha
Helix 2	AA2	A	30	55	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	101	108	Right-handed alpha
Helix 6	AA6	A	109	137	Right-handed alpha
Helix 7	AA7	A	142	159	Right-handed alpha
Helix 8	AA8	A	159	166	Right-handed alpha
Helix 9	AA9	A	167	171	Right-handed 310
Helix 10	AB1	A	176	191	Right-handed alpha
Helix 11	AB2	A	195	222	Right-handed alpha
Helix 12	AB3	A	232	237	Right-handed 310
Helix 13	AB4	A	247	259	Right-handed alpha
Helix 14	AB5	A	260	264	Right-handed 310
Helix 15	AB6	A	267	294	Right-handed alpha
Helix 16	AB7	A	316	330	Right-handed alpha
Helix 17	AB8	B	4	13	Right-handed 310
Helix 18	AB9	B	15	45	Right-handed alpha
Helix 19	AC1	B	54	58	Right-handed 310
Helix 20	AC2	B	62	68	Right-handed alpha
Helix 21	AC3	B	92	117	Right-handed alpha
Helix 22	AC4	B	134	156	Right-handed alpha
Helix 23	AC5	B	186	191	Right-handed 310
Helix 24	AC6	B	194	219	Right-handed alpha
Helix 25	AC7	B	222	230	Right-handed alpha
Helix 26	AC8	B	234	258	Right-handed alpha
Helix 27	AC9	B	272	277	Right-handed alpha
Helix 28	AD1	B	278	290	Right-handed alpha
Helix 29	AD2	B	297	303	Right-handed alpha
Helix 30	AD3	B	306	313	Right-handed alpha
Helix 31	AD4	B	314	318	Right-handed 310
Helix 32	AD5	B	329	333	Right-handed 310
Helix 33	AD6	B	413	425	Right-handed alpha
Helix 34	AD7	B	446	475	Right-handed alpha
Helix 35	AD8	B	476	479	Right-handed 310
Helix 36	AD9	B	487	492	Right-handed alpha
Helix 37	AE1	C	37	43	Right-handed 310
Helix 38	AE2	C	45	74	Right-handed alpha
Helix 39	AE3	C	80	85	Right-handed 310
Helix 40	AE4	C	88	95	Right-handed alpha
Helix 41	AE5	C	108	135	Right-handed alpha
Helix 42	AE6	C	153	181	Right-handed alpha
Helix 43	AE7	C	205	210	Right-handed alpha
Helix 44	AE8	C	229	254	Right-handed alpha
Helix 45	AE9	C	257	262	Right-handed alpha
Helix 46	AF1	C	267	293	Right-handed alpha
Helix 47	AF2	C	298	303	Right-handed alpha
Helix 48	AF3	C	305	324	Right-handed alpha
Helix 49	AF4	C	353	359	Right-handed 310
Helix 50	AF5	C	377	382	Right-handed alpha
Helix 51	AF6	C	385	397	Right-handed alpha
Helix 52	AF7	C	421	454	Right-handed alpha
Helix 53	AF8	D	13	23	Right-handed alpha
Helix 54	AF9	D	33	55	Right-handed alpha
Helix 55	AG1	D	82	86	Right-handed 310
Helix 56	AG2	D	100	107	Right-handed alpha
Helix 57	AG3	D	108	137	Right-handed alpha
Helix 58	AG4	D	140	146	Right-handed alpha
Helix 59	AG5	D	146	158	Right-handed alpha
Helix 60	AG6	D	158	164	Right-handed alpha
Helix 61	AG7	D	166	170	Right-handed 310
Helix 62	AG8	D	175	188	Right-handed alpha
Helix 63	AG9	D	194	219	Right-handed alpha
Helix 64	AH1	D	230	234	Right-handed 310
Helix 65	AH2	D	245	257	Right-handed alpha
Helix 66	AH3	D	263	291	Right-handed alpha
Helix 67	AH4	D	298	307	Right-handed alpha
Helix 68	AH5	D	313	329	Right-handed alpha
Helix 69	AH6	D	329	334	Right-handed alpha
Helix 70	AH7	D	335	338	Right-handed 310
Helix 71	AH8	E	9	14	Right-handed alpha
Helix 72	AH9	E	16	24	Right-handed alpha
Helix 73	AI1	E	26	40	Right-handed alpha
Helix 74	AI2	E	42	47	Right-handed alpha
Helix 75	AI3	E	72	83	Right-handed alpha
Helix 76	AI4	F	17	41	Right-handed alpha
Helix 77	AI5	H	5	11	Right-handed alpha
Helix 78	AI6	H	12	16	Right-handed 310
Helix 79	AI7	H	27	50	Right-handed alpha
Helix 80	AI8	I	3	25	Right-handed alpha
Helix 81	AI9	J	9	31	Right-handed alpha
Helix 82	AJ1	K	12	16	Right-handed 310
Helix 83	AJ2	K	18	23	Right-handed alpha
Helix 84	AJ3	K	27	43	Right-handed alpha
Helix 85	AJ4	L	13	36	Right-handed alpha
Helix 86	AJ5	M	8	31	Right-handed alpha
Helix 87	AJ6	O	183	187	Right-handed alpha
Helix 88	AJ7	T	2	7	Right-handed alpha
Helix 89	AJ8	T	10	23	Right-handed alpha
Helix 90	AJ9	U	11	16	Right-handed alpha
Helix 91	AK1	U	19	24	Right-handed 310
Helix 92	AK2	U	31	36	Right-handed 310
Helix 93	AK3	U	43	51	Right-handed alpha
Helix 94	AK4	U	68	78	Right-handed alpha
Helix 95	AK5	U	88	93	Right-handed alpha
Helix 96	AK6	U	94	96	Right-handed 310
Helix 97	AK7	V	4	8	Right-handed alpha
Helix 98	AK8	V	22	37	Right-handed alpha
Helix 99	AK9	V	41	45	Right-handed 310
Helix 100	AL1	V	55	61	Right-handed alpha
Helix 101	AL2	V	68	76	Right-handed alpha
Helix 102	AL3	V	101	105	Right-handed 310
Helix 103	AL4	V	111	127	Right-handed alpha
Helix 104	AL5	V	133	137	Right-handed 310
Helix 105	AL6	Y	21	31	Right-handed alpha
Helix 106	AL7	Y	32	42	Right-handed alpha
Helix 107	AL8	X	6	35	Right-handed alpha
Helix 108	AL9	Z	4	10	Right-handed alpha
Helix 109	AM1	Z	14	20	Right-handed alpha
Helix 110	AM2	Z	21	27	Right-handed alpha
Helix 111	AM3	Z	34	58	Right-handed alpha
Helix 112	AM4	R	4	9	Right-handed alpha
Helix 113	AM5	R	9	21	Right-handed alpha
Helix 114	AM6	R	23	35	Right-handed alpha

There are 13 sheets in PDB entry 7EDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	C	402	403	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	177	179	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	409	411	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	429	433	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	195	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	374	375	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	173	174	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	51	52	first strand
Strand 2	O	232	244	anti-parallel
Strand 3	O	210	220	anti-parallel
Strand 4	O	194	200	anti-parallel
Strand 5	O	141	147	anti-parallel
Strand 6	O	126	127	anti-parallel
Strand 7	O	93	101	anti-parallel
Strand 8	O	78	87	anti-parallel
Strand 9	O	39	46	anti-parallel
Strand 10	O	232	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	69	70	first strand
Strand 2	O	103	109	anti-parallel
Strand 3	O	115	121	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	25	26	first strand
Strand 2	U	82	83	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	9	11	first strand
Strand 2	V	18	20	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDA