Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EDB entry

There are 4 chains in PDB entry 7EDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 350
B
 MET 1PHE 349
E
 DG 1 G 13
F
 C 1 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7EDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 24Right-handed alpha
Helix 2
AA2
A
32 41Right-handed alpha
Helix 3
AA3
A
44 61Right-handed alpha
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
93 99Right-handed alpha
Helix 7
AA7
A
107 115Right-handed 310
Helix 8
AA8
A
128 144Right-handed alpha
Helix 9
AA9
A
146 163Right-handed alpha
Helix 10
AB1
A
177 186Right-handed alpha
Helix 11
AB2
A
189 191Right-handed 310
Helix 12
AB3
A
192 211Right-handed alpha
Helix 13
AB4
A
252 266Right-handed alpha
Helix 14
AB5
A
285 296Right-handed alpha
Helix 15
AB6
A
305 316Right-handed alpha
Helix 16
AB7
A
320 335Right-handed alpha
Helix 17
AB8
A
338 349Right-handed alpha
Helix 18
AB9
B
6 23Right-handed alpha
Helix 19
AC1
B
32 41Right-handed alpha
Helix 20
AC2
B
44 61Right-handed alpha
Helix 21
AC3
B
80 88Right-handed alpha
Helix 22
AC4
B
88 93Right-handed alpha
Helix 23
AC5
B
93 99Right-handed alpha
Helix 24
AC6
B
107 115Right-handed 310
Helix 25
AC7
B
128 144Right-handed alpha
Helix 26
AC8
B
146 164Right-handed alpha
Helix 27
AC9
B
177 187Right-handed alpha
Helix 28
AD1
B
192 208Right-handed alpha
Helix 29
AD2
B
252 266Right-handed alpha
Helix 30
AD3
B
285 296Right-handed alpha
Helix 31
AD4
B
305 316Right-handed alpha
Helix 32
AD5
B
317 322Right-handed 310
Helix 33
AD6
B
323 335Right-handed alpha
Helix 34
AD7
B
338 347Right-handed alpha
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There are 2 sheets in PDB entry 7EDB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
239 247anti-parallel
Strand 4
A
270 275parallel
Strand 5
A
299 304parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
232 236anti-parallel
Strand 3
B
239 247anti-parallel
Strand 4
B
270 275parallel
Strand 5
B
299 304parallel
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