Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EDF entry

There are 3 chains in PDB entry 7EDF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	SER 1144
B	ALA 27	ASP 1143
C	ALA 27	ASP 1143

There are 64 helices in PDB entry 7EDF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	335	340	Right-handed alpha
Helix 3	AA3	A	362	367	Right-handed alpha
Helix 4	AA4	A	382	387	Right-handed 310
Helix 5	AA5	A	402	404	Right-handed 310
Helix 6	AA6	A	413	419	Right-handed alpha
Helix 7	AA7	A	735	740	Right-handed alpha
Helix 8	AA8	A	744	751	Right-handed alpha
Helix 9	AA9	A	752	754	Right-handed 310
Helix 10	AB1	A	757	780	Right-handed alpha
Helix 11	AB2	A	813	822	Right-handed alpha
Helix 12	AB3	A	863	882	Right-handed alpha
Helix 13	AB4	A	894	905	Right-handed alpha
Helix 14	AB5	A	910	916	Right-handed alpha
Helix 15	AB6	A	916	938	Right-handed alpha
Helix 16	AB7	A	943	961	Right-handed alpha
Helix 17	AB8	A	973	979	Right-handed alpha
Helix 18	AB9	A	985	991	Right-handed alpha
Helix 19	AC1	A	993	1030	Right-handed alpha
Helix 20	AC2	A	1137	1143	Right-handed alpha
Helix 21	AC3	B	291	301	Right-handed alpha
Helix 22	AC4	B	335	340	Right-handed alpha
Helix 23	AC5	B	346	350	Right-handed 310
Helix 24	AC6	B	362	367	Right-handed alpha
Helix 25	AC7	B	380	384	Right-handed 310
Helix 26	AC8	B	401	407	Right-handed 310
Helix 27	AC9	B	413	419	Right-handed alpha
Helix 28	AD1	B	631	635	Right-handed 310
Helix 29	AD2	B	735	740	Right-handed alpha
Helix 30	AD3	B	743	751	Right-handed alpha
Helix 31	AD4	B	752	754	Right-handed 310
Helix 32	AD5	B	757	780	Right-handed alpha
Helix 33	AD6	B	813	821	Right-handed alpha
Helix 34	AD7	B	844	848	Right-handed 310
Helix 35	AD8	B	863	881	Right-handed alpha
Helix 36	AD9	B	883	888	Right-handed 310
Helix 37	AE1	B	894	904	Right-handed alpha
Helix 38	AE2	B	905	907	Right-handed 310
Helix 39	AE3	B	910	915	Right-handed alpha
Helix 40	AE4	B	916	936	Right-handed alpha
Helix 41	AE5	B	942	962	Right-handed alpha
Helix 42	AE6	B	963	965	Right-handed 310
Helix 43	AE7	B	973	979	Right-handed alpha
Helix 44	AE8	B	982	1030	Right-handed alpha
Helix 45	AE9	C	291	301	Right-handed alpha
Helix 46	AF1	C	334	340	Right-handed alpha
Helix 47	AF2	C	362	367	Right-handed alpha
Helix 48	AF3	C	383	386	Right-handed 310
Helix 49	AF4	C	403	407	Right-handed 310
Helix 50	AF5	C	414	419	Right-handed alpha
Helix 51	AF6	C	743	751	Right-handed alpha
Helix 52	AF7	C	752	754	Right-handed 310
Helix 53	AF8	C	755	780	Right-handed alpha
Helix 54	AF9	C	813	822	Right-handed alpha
Helix 55	AG1	C	863	881	Right-handed alpha
Helix 56	AG2	C	883	887	Right-handed 310
Helix 57	AG3	C	894	906	Right-handed alpha
Helix 58	AG4	C	910	916	Right-handed alpha
Helix 59	AG5	C	916	938	Right-handed alpha
Helix 60	AG6	C	942	962	Right-handed alpha
Helix 61	AG7	C	963	965	Right-handed 310
Helix 62	AG8	C	973	979	Right-handed alpha
Helix 63	AG9	C	982	1030	Right-handed alpha
Helix 64	AH1	C	1137	1143	Right-handed alpha

There are 46 sheets in PDB entry 7EDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	562	565	parallel
Strand 3	C	569	574	anti-parallel
Strand 4	C	581	585	anti-parallel
Strand 5	C	543	551	anti-parallel
Strand 6	C	536	540	anti-parallel
Strand 7	C	320	325	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	102	105	anti-parallel
Strand 4	A	116	119	anti-parallel
Strand 5	A	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	226	first strand
Strand 2	A	197	206	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	88	90	anti-parallel
Strand 5	A	264	266	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	316	first strand
Strand 2	A	589	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	639	641	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	536	540	parallel
Strand 3	A	543	551	anti-parallel
Strand 4	A	581	585	anti-parallel
Strand 5	A	572	574	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	392	400	anti-parallel
Strand 3	A	504	512	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	521	522	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	489	491	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	485	486	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	B	42	43	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	688	693	parallel
Strand 3	A	667	672	anti-parallel
Strand 4	A	661	664	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	B	784	785	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	712	first strand
Strand 2	A	1069	1072	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	725	first strand
Strand 2	A	1056	1066	anti-parallel
Strand 3	A	1044	1053	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	733	first strand
Strand 2	A	855	857	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1122	first strand
Strand 2	A	1083	1087	anti-parallel
Strand 3	A	1078	1079	anti-parallel
Strand 4	A	1130	1131	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1094	first strand
Strand 2	A	1099	1102	anti-parallel
Strand 3	A	1110	1111	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	60	65	anti-parallel
Strand 3	B	262	266	anti-parallel
Strand 4	B	88	92	anti-parallel
Strand 5	B	188	194	anti-parallel
Strand 6	B	197	203	anti-parallel
Strand 7	B	219	226	anti-parallel
Strand 8	B	36	37	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	102	105	anti-parallel
Strand 3	B	234	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	124	125	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	589	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	639	642	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	325	first strand
Strand 2	B	535	540	parallel
Strand 3	B	543	551	anti-parallel
Strand 4	B	581	585	anti-parallel
Strand 5	B	572	574	anti-parallel
Strand 6	B	562	563	anti-parallel
Strand 7	C	42	43	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	391	399	anti-parallel
Strand 3	B	505	513	anti-parallel
Strand 4	B	429	434	anti-parallel
Strand 5	B	373	376	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	489	491	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	690	693	parallel
Strand 3	B	667	670	anti-parallel
Strand 4	B	661	664	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	701	first strand
Strand 2	C	784	787	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	725	first strand
Strand 2	B	1056	1067	anti-parallel
Strand 3	B	1044	1052	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	733	first strand
Strand 2	B	855	858	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1073	1075	first strand
Strand 2	B	1091	1094	anti-parallel
Strand 3	B	1099	1102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1119	first strand
Strand 2	B	1083	1087	anti-parallel
Strand 3	B	1078	1080	anti-parallel
Strand 4	B	1130	1131	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	262	266	anti-parallel
Strand 4	C	88	92	anti-parallel
Strand 5	C	188	194	anti-parallel
Strand 6	C	197	203	anti-parallel
Strand 7	C	219	227	anti-parallel
Strand 8	C	36	37	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	234	238	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	116	119	anti-parallel
Strand 5	C	124	127	anti-parallel
Strand 6	C	167	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	589	596	anti-parallel
Strand 3	C	606	610	anti-parallel
Strand 4	C	645	648	anti-parallel
Strand 5	C	639	641	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	392	399	anti-parallel
Strand 3	C	505	512	anti-parallel
Strand 4	C	429	434	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	521	522	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	690	693	parallel
Strand 3	C	667	670	anti-parallel
Strand 4	C	661	664	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	725	first strand
Strand 2	C	1056	1075	anti-parallel
Strand 3	C	1044	1052	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	725	first strand
Strand 2	C	1056	1075	anti-parallel
Strand 3	C	1091	1094	anti-parallel
Strand 4	C	1099	1102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	733	first strand
Strand 2	C	855	858	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1122	first strand
Strand 2	C	1083	1087	anti-parallel
Strand 3	C	1078	1080	anti-parallel
Strand 4	C	1130	1131	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EDF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDF