Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EDH entry

There are 3 chains in PDB entry 7EDH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	SER 1144
B	ALA 27	ASP 1143
C	ALA 27	ASP 1143

There are 49 helices in PDB entry 7EDH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	734	740	Right-handed alpha
Helix 3	AA3	A	744	751	Right-handed alpha
Helix 4	AA4	A	758	780	Right-handed alpha
Helix 5	AA5	A	813	822	Right-handed alpha
Helix 6	AA6	A	863	882	Right-handed alpha
Helix 7	AA7	A	894	905	Right-handed alpha
Helix 8	AA8	A	912	915	Right-handed 310
Helix 9	AA9	A	916	938	Right-handed alpha
Helix 10	AB1	A	946	962	Right-handed alpha
Helix 11	AB2	A	973	979	Right-handed alpha
Helix 12	AB3	A	982	991	Right-handed alpha
Helix 13	AB4	A	993	1030	Right-handed alpha
Helix 14	AB5	A	1137	1143	Right-handed alpha
Helix 15	AB6	B	291	301	Right-handed alpha
Helix 16	AB7	B	334	340	Right-handed alpha
Helix 17	AB8	B	362	367	Right-handed alpha
Helix 18	AB9	B	380	384	Right-handed 310
Helix 19	AC1	B	414	419	Right-handed alpha
Helix 20	AC2	B	734	740	Right-handed alpha
Helix 21	AC3	B	743	752	Right-handed alpha
Helix 22	AC4	B	757	780	Right-handed alpha
Helix 23	AC5	B	813	823	Right-handed alpha
Helix 24	AC6	B	863	881	Right-handed alpha
Helix 25	AC7	B	883	887	Right-handed 310
Helix 26	AC8	B	894	904	Right-handed alpha
Helix 27	AC9	B	910	915	Right-handed alpha
Helix 28	AD1	B	916	938	Right-handed alpha
Helix 29	AD2	B	942	962	Right-handed alpha
Helix 30	AD3	B	963	965	Right-handed 310
Helix 31	AD4	B	973	981	Right-handed alpha
Helix 32	AD5	B	982	1030	Right-handed alpha
Helix 33	AD6	C	291	301	Right-handed alpha
Helix 34	AD7	C	334	341	Right-handed alpha
Helix 35	AD8	C	362	367	Right-handed alpha
Helix 36	AD9	C	414	419	Right-handed alpha
Helix 37	AE1	C	735	740	Right-handed alpha
Helix 38	AE2	C	743	752	Right-handed alpha
Helix 39	AE3	C	755	780	Right-handed alpha
Helix 40	AE4	C	813	821	Right-handed alpha
Helix 41	AE5	C	863	881	Right-handed alpha
Helix 42	AE6	C	883	887	Right-handed 310
Helix 43	AE7	C	894	906	Right-handed alpha
Helix 44	AE8	C	910	915	Right-handed alpha
Helix 45	AE9	C	916	938	Right-handed alpha
Helix 46	AF1	C	942	962	Right-handed alpha
Helix 47	AF2	C	973	981	Right-handed alpha
Helix 48	AF3	C	982	1030	Right-handed alpha
Helix 49	AF4	C	1137	1143	Right-handed alpha

There are 41 sheets in PDB entry 7EDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	60	63	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	562	563	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	102	105	anti-parallel
Strand 4	A	115	117	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	187	194	anti-parallel
Strand 3	A	197	204	anti-parallel
Strand 4	A	224	227	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	140	first strand
Strand 2	A	153	157	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	316	first strand
Strand 2	A	589	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	639	641	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	325	first strand
Strand 2	A	535	540	parallel
Strand 3	A	545	551	anti-parallel
Strand 4	A	581	585	anti-parallel
Strand 5	A	569	574	anti-parallel
Strand 6	A	562	565	anti-parallel
Strand 7	B	42	43	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	688	693	parallel
Strand 3	A	667	672	anti-parallel
Strand 4	A	661	662	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	712	first strand
Strand 2	A	1069	1073	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	725	first strand
Strand 2	A	1056	1066	anti-parallel
Strand 3	A	1044	1053	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	733	first strand
Strand 2	A	855	857	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1084	1087	anti-parallel
Strand 3	A	1078	1079	anti-parallel
Strand 4	A	1130	1131	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1094	first strand
Strand 2	A	1099	1102	anti-parallel
Strand 3	A	1110	1111	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	263	264	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	102	105	anti-parallel
Strand 4	B	115	119	anti-parallel
Strand 5	B	124	126	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	187	194	anti-parallel
Strand 3	B	197	204	anti-parallel
Strand 4	B	221	226	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	140	first strand
Strand 2	B	153	160	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	589	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	639	642	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	325	first strand
Strand 2	B	536	540	parallel
Strand 3	B	543	551	anti-parallel
Strand 4	B	581	585	anti-parallel
Strand 5	B	570	574	anti-parallel
Strand 6	B	562	564	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	392	399	anti-parallel
Strand 3	B	505	512	anti-parallel
Strand 4	B	429	434	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	489	491	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	690	693	parallel
Strand 3	B	667	670	anti-parallel
Strand 4	B	661	664	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	700	first strand
Strand 2	C	784	786	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	725	first strand
Strand 2	B	1056	1067	anti-parallel
Strand 3	B	1044	1052	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	733	first strand
Strand 2	B	855	858	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1073	1075	first strand
Strand 2	B	1091	1094	anti-parallel
Strand 3	B	1099	1102	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1122	first strand
Strand 2	B	1083	1087	anti-parallel
Strand 3	B	1078	1080	anti-parallel
Strand 4	B	1130	1131	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	60	61	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	234	237	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	115	119	anti-parallel
Strand 5	C	124	127	anti-parallel
Strand 6	C	166	169	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	227	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	187	194	anti-parallel
Strand 4	C	88	92	anti-parallel
Strand 5	C	262	265	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	589	596	anti-parallel
Strand 3	C	606	609	anti-parallel
Strand 4	C	646	648	anti-parallel
Strand 5	C	639	641	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	535	540	parallel
Strand 3	C	543	551	anti-parallel
Strand 4	C	581	585	anti-parallel
Strand 5	C	572	574	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	391	400	anti-parallel
Strand 3	C	504	513	anti-parallel
Strand 4	C	429	434	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	690	693	parallel
Strand 3	C	667	670	anti-parallel
Strand 4	C	662	664	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	725	first strand
Strand 2	C	1056	1072	anti-parallel
Strand 3	C	1044	1052	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	733	first strand
Strand 2	C	855	858	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1119	first strand
Strand 2	C	1083	1087	anti-parallel
Strand 3	C	1078	1080	anti-parallel
Strand 4	C	1130	1131	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1091	1094	first strand
Strand 2	C	1099	1102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EDH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDH