Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EDI entry

There are 3 chains in PDB entry 7EDI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	SER 1144
B	ALA 27	ASP 1143
C	ALA 27	ASP 1143

There are 59 helices in PDB entry 7EDI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	335	340	Right-handed alpha
Helix 3	AA3	A	382	387	Right-handed 310
Helix 4	AA4	A	402	404	Right-handed 310
Helix 5	AA5	A	413	419	Right-handed alpha
Helix 6	AA6	A	540	543	Right-handed 310
Helix 7	AA7	A	734	740	Right-handed alpha
Helix 8	AA8	A	743	752	Right-handed alpha
Helix 9	AA9	A	757	780	Right-handed alpha
Helix 10	AB1	A	814	822	Right-handed alpha
Helix 11	AB2	A	863	882	Right-handed alpha
Helix 12	AB3	A	883	888	Right-handed alpha
Helix 13	AB4	A	894	905	Right-handed alpha
Helix 14	AB5	A	909	913	Right-handed 310
Helix 15	AB6	A	916	938	Right-handed alpha
Helix 16	AB7	A	945	962	Right-handed alpha
Helix 17	AB8	A	973	981	Right-handed alpha
Helix 18	AB9	A	982	1030	Right-handed alpha
Helix 19	AC1	A	1137	1143	Right-handed alpha
Helix 20	AC2	B	291	301	Right-handed alpha
Helix 21	AC3	B	334	340	Right-handed alpha
Helix 22	AC4	B	362	367	Right-handed alpha
Helix 23	AC5	B	380	384	Right-handed 310
Helix 24	AC6	B	403	407	Right-handed 310
Helix 25	AC7	B	734	740	Right-handed alpha
Helix 26	AC8	B	743	752	Right-handed alpha
Helix 27	AC9	B	757	780	Right-handed alpha
Helix 28	AD1	B	813	823	Right-handed alpha
Helix 29	AD2	B	863	881	Right-handed alpha
Helix 30	AD3	B	894	904	Right-handed alpha
Helix 31	AD4	B	905	907	Right-handed 310
Helix 32	AD5	B	910	916	Right-handed alpha
Helix 33	AD6	B	916	938	Right-handed alpha
Helix 34	AD7	B	942	961	Right-handed alpha
Helix 35	AD8	B	962	965	Right-handed 310
Helix 36	AD9	B	973	981	Right-handed alpha
Helix 37	AE1	B	982	1030	Right-handed alpha
Helix 38	AE2	C	291	301	Right-handed alpha
Helix 39	AE3	C	362	367	Right-handed alpha
Helix 40	AE4	C	382	387	Right-handed 310
Helix 41	AE5	C	402	404	Right-handed 310
Helix 42	AE6	C	413	419	Right-handed alpha
Helix 43	AE7	C	435	440	Right-handed alpha
Helix 44	AE8	C	735	740	Right-handed alpha
Helix 45	AE9	C	743	751	Right-handed alpha
Helix 46	AF1	C	752	754	Right-handed 310
Helix 47	AF2	C	755	780	Right-handed alpha
Helix 48	AF3	C	813	821	Right-handed alpha
Helix 49	AF4	C	863	881	Right-handed alpha
Helix 50	AF5	C	883	887	Right-handed 310
Helix 51	AF6	C	894	905	Right-handed alpha
Helix 52	AF7	C	910	915	Right-handed alpha
Helix 53	AF8	C	916	938	Right-handed alpha
Helix 54	AF9	C	942	962	Right-handed alpha
Helix 55	AG1	C	963	965	Right-handed 310
Helix 56	AG2	C	973	981	Right-handed alpha
Helix 57	AG3	C	986	1030	Right-handed alpha
Helix 58	AG4	C	1113	1115	Right-handed 310
Helix 59	AG5	C	1137	1143	Right-handed alpha

There are 49 sheets in PDB entry 7EDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	60	63	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	102	103	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	226	first strand
Strand 2	A	197	206	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	88	93	anti-parallel
Strand 5	A	262	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	163	165	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	316	first strand
Strand 2	A	589	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	640	641	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	535	538	parallel
Strand 3	A	545	551	anti-parallel
Strand 4	A	581	585	anti-parallel
Strand 5	A	572	574	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	392	400	anti-parallel
Strand 3	A	504	512	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	373	377	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	521	522	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	489	491	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	485	486	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	B	42	43	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	688	693	parallel
Strand 3	A	667	672	anti-parallel
Strand 4	A	661	662	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	B	784	785	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	712	first strand
Strand 2	A	1069	1073	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	725	first strand
Strand 2	A	1056	1066	anti-parallel
Strand 3	A	1044	1053	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	732	first strand
Strand 2	A	856	858	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1084	1087	anti-parallel
Strand 3	A	1078	1079	anti-parallel
Strand 4	A	1130	1131	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1094	first strand
Strand 2	A	1099	1102	anti-parallel
Strand 3	A	1110	1111	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	60	62	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	102	105	anti-parallel
Strand 4	B	116	118	anti-parallel
Strand 5	B	125	126	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	92	first strand
Strand 2	B	187	194	anti-parallel
Strand 3	B	197	204	anti-parallel
Strand 4	B	221	227	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	589	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	639	642	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	325	first strand
Strand 2	B	536	540	parallel
Strand 3	B	543	551	anti-parallel
Strand 4	B	581	585	anti-parallel
Strand 5	B	572	574	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	392	399	anti-parallel
Strand 3	B	505	512	anti-parallel
Strand 4	B	430	434	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	489	491	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	690	693	parallel
Strand 3	B	667	670	anti-parallel
Strand 4	B	661	664	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	701	first strand
Strand 2	C	785	787	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	725	first strand
Strand 2	B	1056	1067	anti-parallel
Strand 3	B	1044	1047	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	725	first strand
Strand 2	B	1056	1067	anti-parallel
Strand 3	B	1050	1052	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	733	first strand
Strand 2	B	855	858	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1122	first strand
Strand 2	B	1083	1087	anti-parallel
Strand 3	B	1078	1080	anti-parallel
Strand 4	B	1130	1131	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1091	1094	first strand
Strand 2	B	1099	1102	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	60	61	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	234	238	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	115	120	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	166	167	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	227	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	187	194	anti-parallel
Strand 4	C	88	92	anti-parallel
Strand 5	C	262	266	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	589	596	anti-parallel
Strand 3	C	606	609	anti-parallel
Strand 4	C	646	648	anti-parallel
Strand 5	C	639	641	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	325	first strand
Strand 2	C	535	540	parallel
Strand 3	C	545	551	anti-parallel
Strand 4	C	581	585	anti-parallel
Strand 5	C	572	574	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	355	first strand
Strand 2	C	392	400	anti-parallel
Strand 3	C	504	512	anti-parallel
Strand 4	C	428	434	anti-parallel
Strand 5	C	373	377	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	359	first strand
Strand 2	C	521	522	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	451	first strand
Strand 2	C	489	491	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	485	486	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	690	693	parallel
Strand 3	C	667	670	anti-parallel
Strand 4	C	662	664	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	725	first strand
Strand 2	C	1056	1074	anti-parallel
Strand 3	C	1050	1052	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1044	1047	first strand
Strand 2	C	1056	1074	anti-parallel
Strand 3	C	1091	1094	anti-parallel
Strand 4	C	1099	1102	anti-parallel
Strand 5	C	1110	1111	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	733	first strand
Strand 2	C	855	858	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1119	first strand
Strand 2	C	1083	1087	anti-parallel
Strand 3	C	1078	1080	anti-parallel
Strand 4	C	1130	1131	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EDI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDI