Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EDR entry

There are 4 chains in PDB entry 7EDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ILE 312
C
 THR 516LEU 635
B
 ASN 9GLN 313
D
 LEU 514LEU 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7EDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 45Right-handed alpha
Helix 2
AA2
A
48 50Right-handed 310
Helix 3
AA3
A
71 75Right-handed 310
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
105 122Right-handed alpha
Helix 7
AA7
A
128 145Right-handed alpha
Helix 8
AA8
A
154 159Right-handed alpha
Helix 9
AA9
A
164 170Right-handed alpha
Helix 10
AB1
A
174 189Right-handed alpha
Helix 11
AB2
A
193 207Right-handed alpha
Helix 12
AB3
A
283 305Right-handed alpha
Helix 13
AB4
A
306 311Right-handed 310
Helix 14
AB5
C
552 573Right-handed alpha
Helix 15
AB6
C
573 588Right-handed alpha
Helix 16
AB7
C
589 591Right-handed 310
Helix 17
AB8
C
592 596Right-handed 310
Helix 18
AB9
C
597 609Right-handed alpha
Helix 19
AC1
C
612 622Right-handed alpha
Helix 20
AC2
C
624 634Right-handed alpha
Helix 21
AC3
B
32 45Right-handed alpha
Helix 22
AC4
B
48 50Right-handed 310
Helix 23
AC5
B
71 75Right-handed 310
Helix 24
AC6
B
79 83Right-handed 310
Helix 25
AC7
B
98 103Right-handed alpha
Helix 26
AC8
B
105 122Right-handed alpha
Helix 27
AC9
B
128 145Right-handed alpha
Helix 28
AD1
B
158 163Right-handed alpha
Helix 29
AD2
B
164 169Right-handed alpha
Helix 30
AD3
B
174 187Right-handed alpha
Helix 31
AD4
B
193 206Right-handed alpha
Helix 32
AD5
B
283 305Right-handed alpha
Helix 33
AD6
B
306 311Right-handed 310
Helix 34
AD7
D
552 573Right-handed alpha
Helix 35
AD8
D
573 588Right-handed alpha
Helix 36
AD9
D
589 591Right-handed 310
Helix 37
AE1
D
592 596Right-handed 310
Helix 38
AE2
D
597 610Right-handed alpha
Helix 39
AE3
D
612 622Right-handed alpha
Helix 40
AE4
D
624 635Right-handed alpha
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There are 8 sheets in PDB entry 7EDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
85 92parallel
Strand 4
A
52 57anti-parallel
Strand 5
A
63 65anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
225 230anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
248 251anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 261first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
277 280anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
528 532first strand
Strand 2
C
547 551anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
85 92parallel
Strand 4
B
52 57anti-parallel
Strand 5
B
63 65anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
225 230anti-parallel
Strand 3
B
234 239anti-parallel
Strand 4
B
248 251anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 261first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
277 280anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
528 532first strand
Strand 2
D
547 551anti-parallel
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