Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EDZ entry

There are 4 chains in PDB entry 7EDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 5	ASP 309
C	ASP 5	GLY 308
B	ASP 5	ARG 310
A	ASP 5	ASP 309

There are 60 helices in PDB entry 7EDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	15	33	Right-handed alpha
Helix 2	AA2	D	63	76	Right-handed alpha
Helix 3	AA3	D	92	96	Right-handed 310
Helix 4	AA4	D	97	105	Right-handed alpha
Helix 5	AA5	D	121	125	Right-handed 310
Helix 6	AA6	D	127	142	Right-handed alpha
Helix 7	AA7	D	151	167	Right-handed alpha
Helix 8	AA8	D	168	171	Right-handed 310
Helix 9	AA9	D	187	191	Right-handed 310
Helix 10	AB1	D	197	201	Right-handed 310
Helix 11	AB2	D	213	220	Right-handed alpha
Helix 12	AB3	D	238	251	Right-handed alpha
Helix 13	AB4	D	261	263	Right-handed 310
Helix 14	AB5	D	281	287	Right-handed alpha
Helix 15	AB6	D	290	309	Right-handed alpha
Helix 16	AB7	C	15	33	Right-handed alpha
Helix 17	AB8	C	63	76	Right-handed alpha
Helix 18	AB9	C	92	96	Right-handed 310
Helix 19	AC1	C	97	105	Right-handed alpha
Helix 20	AC2	C	121	125	Right-handed 310
Helix 21	AC3	C	127	142	Right-handed alpha
Helix 22	AC4	C	151	167	Right-handed alpha
Helix 23	AC5	C	168	171	Right-handed 310
Helix 24	AC6	C	187	191	Right-handed 310
Helix 25	AC7	C	197	201	Right-handed 310
Helix 26	AC8	C	213	220	Right-handed alpha
Helix 27	AC9	C	238	251	Right-handed alpha
Helix 28	AD1	C	281	287	Right-handed alpha
Helix 29	AD2	C	290	308	Right-handed alpha
Helix 30	AD3	B	5	10	Right-handed 310
Helix 31	AD4	B	15	33	Right-handed alpha
Helix 32	AD5	B	63	76	Right-handed alpha
Helix 33	AD6	B	92	96	Right-handed 310
Helix 34	AD7	B	97	105	Right-handed alpha
Helix 35	AD8	B	123	125	Right-handed 310
Helix 36	AD9	B	127	142	Right-handed alpha
Helix 37	AE1	B	151	167	Right-handed alpha
Helix 38	AE2	B	168	171	Right-handed 310
Helix 39	AE3	B	187	191	Right-handed 310
Helix 40	AE4	B	197	201	Right-handed 310
Helix 41	AE5	B	213	220	Right-handed alpha
Helix 42	AE6	B	238	251	Right-handed alpha
Helix 43	AE7	B	261	263	Right-handed 310
Helix 44	AE8	B	281	287	Right-handed alpha
Helix 45	AE9	B	290	310	Right-handed alpha
Helix 46	AF1	A	15	33	Right-handed alpha
Helix 47	AF2	A	63	76	Right-handed alpha
Helix 48	AF3	A	92	96	Right-handed 310
Helix 49	AF4	A	97	105	Right-handed alpha
Helix 50	AF5	A	123	125	Right-handed 310
Helix 51	AF6	A	127	142	Right-handed alpha
Helix 52	AF7	A	151	167	Right-handed alpha
Helix 53	AF8	A	168	171	Right-handed 310
Helix 54	AF9	A	187	191	Right-handed 310
Helix 55	AG1	A	197	201	Right-handed 310
Helix 56	AG2	A	213	220	Right-handed alpha
Helix 57	AG3	A	238	251	Right-handed alpha
Helix 58	AG4	A	261	263	Right-handed 310
Helix 59	AG5	A	281	287	Right-handed alpha
Helix 60	AG6	A	290	308	Right-handed alpha

There are 13 sheets in PDB entry 7EDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	149	first strand
Strand 2	D	79	85	parallel
Strand 3	D	37	42	parallel
Strand 4	D	173	177	parallel
Strand 5	D	226	233	parallel
Strand 6	D	254	259	parallel
Strand 7	D	266	270	anti-parallel
Strand 8	D	275	279	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	56	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	118	119	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	208	209	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	149	first strand
Strand 2	C	79	85	parallel
Strand 3	C	37	42	parallel
Strand 4	C	173	177	parallel
Strand 5	C	226	233	parallel
Strand 6	C	254	259	parallel
Strand 7	C	266	270	anti-parallel
Strand 8	C	275	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	56	58	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	118	119	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	208	209	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	79	85	parallel
Strand 3	B	37	42	parallel
Strand 4	B	173	177	parallel
Strand 5	B	226	233	parallel
Strand 6	B	254	259	parallel
Strand 7	B	266	270	anti-parallel
Strand 8	B	275	279	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	55	59	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	46	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	115	121	anti-parallel
Strand 3	A	115	121	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	203	209	anti-parallel
Strand 3	A	203	209	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	149	first strand
Strand 2	A	79	85	parallel
Strand 3	A	37	42	parallel
Strand 4	A	173	177	parallel
Strand 5	A	226	233	parallel
Strand 6	A	254	259	parallel
Strand 7	A	266	270	anti-parallel
Strand 8	A	275	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EDZ