Analysis of interatomic Contacts of Structural Units in PDB entry:
7EE6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EE6 entry

There are 7 chains in PDB entry 7EE6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	VAL 139
B	ALA 22	ASN 141
C	ALA 22	ASN 141
D	ALA 22	VAL 139
E	ALA 22	THR 140
F	ASN 23	LEU 270
G	VAL 19	LYS 242

There are 25 helices in PDB entry 7EE6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	96	Right-handed alpha
Helix 2	AA2	A	110	117	Right-handed alpha
Helix 3	AA3	B	81	96	Right-handed alpha
Helix 4	AA4	B	110	117	Right-handed alpha
Helix 5	AA5	C	81	96	Right-handed alpha
Helix 6	AA6	C	110	117	Right-handed alpha
Helix 7	AA7	D	81	96	Right-handed alpha
Helix 8	AA8	D	110	117	Right-handed alpha
Helix 9	AA9	E	81	96	Right-handed alpha
Helix 10	AB1	E	110	117	Right-handed alpha
Helix 11	AB2	F	23	27	Right-handed 310
Helix 12	AB3	F	40	47	Right-handed alpha
Helix 13	AB4	F	47	54	Right-handed alpha
Helix 14	AB5	F	168	181	Right-handed alpha
Helix 15	AB6	F	182	186	Right-handed 310
Helix 16	AB7	F	199	210	Right-handed alpha
Helix 17	AB8	F	243	245	Right-handed 310
Helix 18	AB9	G	29	37	Right-handed alpha
Helix 19	AC1	G	46	52	Right-handed alpha
Helix 20	AC2	G	71	84	Right-handed alpha
Helix 21	AC3	G	106	115	Right-handed alpha
Helix 22	AC4	G	121	132	Right-handed alpha
Helix 23	AC5	G	141	143	Right-handed 310
Helix 24	AC6	G	207	213	Right-handed 310
Helix 25	AC7	G	232	241	Right-handed alpha

There are 7 sheets in PDB entry 7EE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	29	45	anti-parallel
Strand 3	B	121	127	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	29	45	anti-parallel
Strand 6	E	121	127	anti-parallel
Strand 7	E	99	104	anti-parallel
Strand 8	E	29	45	anti-parallel
Strand 9	C	121	127	anti-parallel
Strand 10	C	99	104	anti-parallel
Strand 11	C	29	45	anti-parallel
Strand 12	D	121	127	anti-parallel
Strand 13	D	99	104	anti-parallel
Strand 14	D	29	45	anti-parallel
Strand 15	A	121	127	anti-parallel
Strand 16	A	68	72	parallel
Strand 17	A	48	58	anti-parallel
Strand 18	A	29	45	anti-parallel
Strand 19	B	121	127	anti-parallel
Strand 20	B	68	72	parallel
Strand 21	B	48	58	anti-parallel
Strand 22	B	29	45	anti-parallel
Strand 23	E	121	127	anti-parallel
Strand 24	E	68	72	parallel
Strand 25	E	48	58	anti-parallel
Strand 26	E	29	45	anti-parallel
Strand 27	C	121	127	anti-parallel
Strand 28	C	68	72	parallel
Strand 29	C	48	58	anti-parallel
Strand 30	C	29	45	anti-parallel
Strand 31	D	121	127	anti-parallel
Strand 32	D	68	72	parallel
Strand 33	D	48	58	anti-parallel
Strand 34	D	29	45	anti-parallel
Strand 35	A	121	127	anti-parallel
Strand 36	A	99	104	anti-parallel

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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	29	45	anti-parallel
Strand 3	B	121	127	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	29	45	anti-parallel
Strand 6	E	121	127	anti-parallel
Strand 7	E	99	104	anti-parallel
Strand 8	E	29	45	anti-parallel
Strand 9	C	121	127	anti-parallel
Strand 10	C	99	104	anti-parallel
Strand 11	C	29	45	anti-parallel
Strand 12	D	121	127	anti-parallel
Strand 13	D	99	104	anti-parallel
Strand 14	D	29	45	anti-parallel
Strand 15	A	121	127	anti-parallel
Strand 16	A	99	104	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	91	96	anti-parallel
Strand 3	F	105	113	anti-parallel
Strand 4	F	119	126	anti-parallel
Strand 5	F	61	65	anti-parallel
Strand 6	F	29	33	parallel
Strand 7	F	262	266	anti-parallel
Strand 8	F	247	251	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	132	136	parallel
Strand 3	F	146	151	anti-parallel
Strand 4	F	154	160	anti-parallel
Strand 5	F	189	195	parallel
Strand 6	F	233	238	anti-parallel
Strand 7	F	216	219	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	26	first strand
Strand 2	G	92	98	anti-parallel
Strand 3	G	145	153	anti-parallel
Strand 4	G	160	167	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	69	first strand
Strand 2	G	133	136	anti-parallel
Strand 3	G	103	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	198	200	anti-parallel
Strand 3	G	230	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EE6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EE6