Analysis of interatomic Contacts of Structural Units in PDB entry:
7EEA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EEA entry

There are 3 chains in PDB entry 7EEA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 103	ARG 758
B	GLY 103	ARG 758
C	GLY 103	ARG 758

There are 15 helices in PDB entry 7EEA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	126	Right-handed alpha
Helix 2	AA2	A	129	133	Right-handed 310
Helix 3	AA3	A	141	156	Right-handed alpha
Helix 4	AA4	A	339	343	Right-handed 310
Helix 5	AA5	A	707	711	Right-handed 310
Helix 6	AA6	B	103	106	Right-handed 310
Helix 7	AA7	B	120	126	Right-handed alpha
Helix 8	AA8	B	129	133	Right-handed 310
Helix 9	AA9	B	141	156	Right-handed alpha
Helix 10	AB1	B	707	711	Right-handed 310
Helix 11	AB2	C	103	106	Right-handed 310
Helix 12	AB3	C	120	126	Right-handed alpha
Helix 13	AB4	C	129	133	Right-handed 310
Helix 14	AB5	C	141	156	Right-handed alpha
Helix 15	AB6	C	707	711	Right-handed 310

There are 25 sheets in PDB entry 7EEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	118	119	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	165	169	parallel
Strand 3	A	188	192	parallel
Strand 4	A	213	215	parallel
Strand 5	A	243	245	parallel
Strand 6	A	269	271	parallel
Strand 7	A	295	297	parallel
Strand 8	A	324	326	parallel
Strand 9	A	355	357	parallel
Strand 10	A	378	380	parallel
Strand 11	A	413	415	parallel
Strand 12	A	449	450	parallel
Strand 13	A	480	481	parallel

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There are 18 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	180	183	parallel
Strand 3	A	208	210	parallel
Strand 4	A	238	240	parallel
Strand 5	A	264	266	parallel
Strand 6	A	286	292	parallel
Strand 7	A	316	321	parallel
Strand 8	A	348	351	parallel
Strand 9	A	371	375	parallel
Strand 10	A	407	410	parallel
Strand 11	A	443	446	parallel
Strand 12	A	474	477	parallel
Strand 13	A	499	505	parallel
Strand 14	A	517	530	parallel
Strand 15	A	540	552	parallel
Strand 16	A	566	571	parallel
Strand 17	A	647	652	parallel
Strand 18	A	676	678	parallel

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There are 19 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	198	202	parallel
Strand 3	A	227	232	parallel
Strand 4	A	250	256	parallel
Strand 5	A	278	284	parallel
Strand 6	A	303	308	parallel
Strand 7	A	331	336	parallel
Strand 8	A	362	367	parallel
Strand 9	A	399	402	parallel
Strand 10	A	422	425	parallel
Strand 11	A	465	468	parallel
Strand 12	A	487	492	parallel
Strand 13	A	517	530	parallel
Strand 14	A	540	552	parallel
Strand 15	A	575	578	parallel
Strand 16	A	658	661	parallel
Strand 17	A	685	696	parallel
Strand 18	A	751	758	anti-parallel
Strand 19	A	718	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	535	first strand
Strand 2	A	557	559	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	601	604	parallel
Strand 3	A	607	611	anti-parallel
Strand 4	A	635	641	anti-parallel
Strand 5	A	628	630	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	596	first strand
Strand 2	A	615	616	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	705	first strand
Strand 2	A	738	743	anti-parallel
Strand 3	A	729	734	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	118	119	anti-parallel

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There are 21 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	165	169	parallel
Strand 3	B	188	192	parallel
Strand 4	B	213	215	parallel
Strand 5	B	238	245	parallel
Strand 6	B	264	271	parallel
Strand 7	B	286	292	parallel
Strand 8	B	316	321	parallel
Strand 9	B	348	351	parallel
Strand 10	B	371	375	parallel
Strand 11	B	406	410	parallel
Strand 12	B	443	446	parallel
Strand 13	B	474	477	parallel
Strand 14	B	499	505	parallel
Strand 15	B	517	530	parallel
Strand 16	B	540	552	parallel
Strand 17	B	575	578	parallel
Strand 18	B	658	661	parallel
Strand 19	B	685	696	parallel
Strand 20	B	751	758	anti-parallel
Strand 21	B	718	723	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	723	first strand
Strand 2	B	751	758	anti-parallel
Strand 3	B	685	696	anti-parallel
Strand 4	B	658	661	parallel
Strand 5	B	575	578	parallel
Strand 6	B	540	552	parallel
Strand 7	B	566	571	parallel
Strand 8	B	647	652	parallel
Strand 9	B	676	678	parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	180	183	parallel
Strand 3	B	208	210	parallel
Strand 4	B	238	245	parallel
Strand 5	B	264	271	parallel
Strand 6	B	295	297	parallel
Strand 7	B	324	326	parallel
Strand 8	B	355	357	parallel
Strand 9	B	378	380	parallel
Strand 10	B	413	415	parallel
Strand 11	B	449	450	parallel
Strand 12	B	480	481	parallel

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There are 29 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	198	202	parallel
Strand 3	B	227	232	parallel
Strand 4	B	250	256	parallel
Strand 5	B	278	284	parallel
Strand 6	B	303	308	parallel
Strand 7	B	333	336	parallel
Strand 8	B	364	367	parallel
Strand 9	B	399	402	parallel
Strand 10	B	422	425	parallel
Strand 11	B	465	468	parallel
Strand 12	B	487	492	parallel
Strand 13	B	517	530	parallel
Strand 14	B	499	505	parallel
Strand 15	B	474	477	parallel
Strand 16	B	443	446	parallel
Strand 17	B	406	410	parallel
Strand 18	B	371	375	parallel
Strand 19	B	348	351	parallel
Strand 20	B	316	321	parallel
Strand 21	B	286	292	parallel
Strand 22	B	264	271	parallel
Strand 23	B	295	297	parallel
Strand 24	B	324	326	parallel
Strand 25	B	355	357	parallel
Strand 26	B	378	380	parallel
Strand 27	B	413	415	parallel
Strand 28	B	449	450	parallel
Strand 29	B	480	481	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	557	559	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	589	first strand
Strand 2	B	601	604	parallel
Strand 3	B	607	611	anti-parallel
Strand 4	B	635	641	anti-parallel
Strand 5	B	628	630	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	615	616	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	705	first strand
Strand 2	B	738	743	anti-parallel
Strand 3	B	729	734	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	C	118	119	anti-parallel

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There are 13 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	165	169	parallel
Strand 3	C	188	192	parallel
Strand 4	C	213	215	parallel
Strand 5	C	243	245	parallel
Strand 6	C	269	271	parallel
Strand 7	C	295	297	parallel
Strand 8	C	324	326	parallel
Strand 9	C	355	357	parallel
Strand 10	C	378	380	parallel
Strand 11	C	413	415	parallel
Strand 12	C	449	450	parallel
Strand 13	C	480	481	parallel

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There are 20 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	180	183	parallel
Strand 3	C	208	210	parallel
Strand 4	C	238	240	parallel
Strand 5	C	264	266	parallel
Strand 6	C	286	292	parallel
Strand 7	C	316	321	parallel
Strand 8	C	349	351	parallel
Strand 9	C	372	375	parallel
Strand 10	C	407	410	parallel
Strand 11	C	443	446	parallel
Strand 12	C	474	477	parallel
Strand 13	C	499	505	parallel
Strand 14	C	524	530	parallel
Strand 15	C	549	552	parallel
Strand 16	C	575	578	parallel
Strand 17	C	658	661	parallel
Strand 18	C	685	696	parallel
Strand 19	C	751	758	anti-parallel
Strand 20	C	718	723	anti-parallel

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There are 17 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	198	202	parallel
Strand 3	C	227	232	parallel
Strand 4	C	250	256	parallel
Strand 5	C	278	284	parallel
Strand 6	C	303	308	parallel
Strand 7	C	331	336	parallel
Strand 8	C	362	367	parallel
Strand 9	C	399	402	parallel
Strand 10	C	422	425	parallel
Strand 11	C	465	467	parallel
Strand 12	C	487	492	parallel
Strand 13	C	517	522	parallel
Strand 14	C	540	545	parallel
Strand 15	C	566	571	parallel
Strand 16	C	647	652	parallel
Strand 17	C	676	678	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	533	535	first strand
Strand 2	C	557	559	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	601	604	parallel
Strand 3	C	607	611	anti-parallel
Strand 4	C	635	641	anti-parallel
Strand 5	C	628	630	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	615	616	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	705	first strand
Strand 2	C	738	743	anti-parallel
Strand 3	C	729	734	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EEA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EEA