Analysis of interatomic Contacts of Structural Units in PDB entry:
7EF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EF0 entry

There are 3 chains in PDB entry 7EF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 133ALA 279
B
 LYS 126LEU 272
P
 ALA 1LYS 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 7EF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
157 161Right-handed 310
Helix 2
AA2
A
173 177Right-handed 310
Helix 3
AA3
A
182 185Right-handed alpha
Helix 4
AA4
A
194 201Right-handed 310
Helix 5
AA5
A
263 265Right-handed 310
Helix 6
AA6
A
266 272Right-handed alpha
Helix 7
AA7
A
272 279Right-handed alpha
Helix 8
AA8
B
173 177Right-handed 310
Helix 9
AA9
B
182 185Right-handed alpha
Helix 10
AB1
B
194 201Right-handed 310
Helix 11
AB2
B
255 257Right-handed 310
Helix 12
AB3
B
262 271Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7EF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
164 169anti-parallel
Strand 3
A
146 156anti-parallel
Strand 4
A
136 139anti-parallel
Strand 5
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
259 261anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
217 228anti-parallel
Strand 5
A
240 245anti-parallel
Strand 6
A
251 255anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
146 156anti-parallel
Strand 4
B
136 139anti-parallel
Strand 5
B
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
259 261anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
218 228anti-parallel
Strand 5
B
240 245anti-parallel
Strand 6
B
251 254anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il