Analysis of interatomic Contacts of Structural Units in PDB entry:
7EF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EF8 entry

There are 5 chains in PDB entry 7EF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 51GLN 470
B
 T 2 C 7
B
 G 9 T 14
C
 T 1 C 7
C
 G 9 C 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7EF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
60 79Right-handed alpha
Helix 3
AA3
A
82 91Right-handed alpha
Helix 4
AA4
A
93 109Right-handed alpha
Helix 5
AA5
A
112 127Right-handed alpha
Helix 6
AA6
A
129 136Right-handed alpha
Helix 7
AA7
A
137 146Right-handed alpha
Helix 8
AA8
A
151 168Right-handed alpha
Helix 9
AA9
A
175 183Right-handed alpha
Helix 10
AB1
A
187 200Right-handed alpha
Helix 11
AB2
A
207 218Right-handed alpha
Helix 12
AB3
A
226 241Right-handed alpha
Helix 13
AB4
A
245 260Right-handed alpha
Helix 14
AB5
A
267 271Right-handed 310
Helix 15
AB6
A
277 284Right-handed alpha
Helix 16
AB7
A
318 326Right-handed 310
Helix 17
AB8
A
379 383Right-handed 310
Helix 18
AB9
A
386 398Right-handed alpha
Helix 19
AC1
A
401 405Right-handed 310
Helix 20
AC2
A
445 451Right-handed alpha
Helix 21
AC3
A
455 468Right-handed alpha
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There are 2 sheets in PDB entry 7EF8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
336 347anti-parallel
Strand 4
A
418 428parallel
Strand 5
A
406 414anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
336 347anti-parallel
Strand 3
A
355 360anti-parallel
Strand 4
A
441 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il