Analysis of interatomic Contacts of Structural Units in PDB entry:
7EFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EFS entry

There are 4 chains in PDB entry 7EFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 339
B
 MET 1GLY 339
C
 MET 1GLY 339
D
 MET 1GLY 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 7EFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
48 61Right-handed alpha
Helix 4
AA4
A
64 67Right-handed 310
Helix 5
AA5
A
75 80Right-handed alpha
Helix 6
AA6
A
88 96Right-handed alpha
Helix 7
AA7
A
125 136Right-handed alpha
Helix 8
AA8
A
155 176Right-handed alpha
Helix 9
AA9
A
193 215Right-handed alpha
Helix 10
AB1
A
218 222Right-handed 310
Helix 11
AB2
A
239 253Right-handed alpha
Helix 12
AB3
A
270 284Right-handed alpha
Helix 13
AB4
A
297 309Right-handed alpha
Helix 14
AB5
A
314 333Right-handed alpha
Helix 15
AB6
B
8 20Right-handed alpha
Helix 16
AB7
B
32 43Right-handed alpha
Helix 17
AB8
B
48 61Right-handed alpha
Helix 18
AB9
B
64 67Right-handed 310
Helix 19
AC1
B
75 80Right-handed alpha
Helix 20
AC2
B
88 96Right-handed alpha
Helix 21
AC3
B
125 136Right-handed alpha
Helix 22
AC4
B
155 176Right-handed alpha
Helix 23
AC5
B
193 215Right-handed alpha
Helix 24
AC6
B
218 222Right-handed 310
Helix 25
AC7
B
239 253Right-handed alpha
Helix 26
AC8
B
270 284Right-handed alpha
Helix 27
AC9
B
297 309Right-handed alpha
Helix 28
AD1
B
314 333Right-handed alpha
Helix 29
AD2
C
8 20Right-handed alpha
Helix 30
AD3
C
32 43Right-handed alpha
Helix 31
AD4
C
48 61Right-handed alpha
Helix 32
AD5
C
64 67Right-handed 310
Helix 33
AD6
C
75 80Right-handed alpha
Helix 34
AD7
C
88 96Right-handed alpha
Helix 35
AD8
C
125 136Right-handed alpha
Helix 36
AD9
C
155 176Right-handed alpha
Helix 37
AE1
C
193 215Right-handed alpha
Helix 38
AE2
C
218 222Right-handed 310
Helix 39
AE3
C
239 255Right-handed alpha
Helix 40
AE4
C
270 284Right-handed alpha
Helix 41
AE5
C
297 309Right-handed alpha
Helix 42
AE6
C
314 333Right-handed alpha
Helix 43
AE7
D
8 20Right-handed alpha
Helix 44
AE8
D
32 41Right-handed alpha
Helix 45
AE9
D
48 61Right-handed alpha
Helix 46
AF1
D
64 67Right-handed 310
Helix 47
AF2
D
75 80Right-handed alpha
Helix 48
AF3
D
88 96Right-handed alpha
Helix 49
AF4
D
125 136Right-handed alpha
Helix 50
AF5
D
155 176Right-handed alpha
Helix 51
AF6
D
193 215Right-handed alpha
Helix 52
AF7
D
218 222Right-handed 310
Helix 53
AF8
D
239 253Right-handed alpha
Helix 54
AF9
D
270 284Right-handed alpha
Helix 55
AG1
D
297 309Right-handed alpha
Helix 56
AG2
D
311 313Right-handed 310
Helix 57
AG3
D
314 333Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7EFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
69 74parallel
Strand 3
A
99 103parallel
Strand 4
A
140 147parallel
Strand 5
A
179 186parallel
Strand 6
A
223 224parallel
Strand 7
A
261 264parallel
Strand 8
A
291 296parallel
Strand 9
A
25 29parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
69 74parallel
Strand 3
B
99 103parallel
Strand 4
B
140 147parallel
Strand 5
B
179 186parallel
Strand 6
B
223 224parallel
Strand 7
B
261 264parallel
Strand 8
B
291 296parallel
Strand 9
B
25 29parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
69 74parallel
Strand 3
C
99 103parallel
Strand 4
C
140 147parallel
Strand 5
C
179 186parallel
Strand 6
C
223 224parallel
Strand 7
C
261 264parallel
Strand 8
C
291 296parallel
Strand 9
C
25 29parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 29first strand
Strand 2
D
69 74parallel
Strand 3
D
99 103parallel
Strand 4
D
140 147parallel
Strand 5
D
179 186parallel
Strand 6
D
223 224parallel
Strand 7
D
261 264parallel
Strand 8
D
291 296parallel
Strand 9
D
25 29parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 110first strand
Strand 2
D
118 120anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il