Analysis of interatomic Contacts of Structural Units in PDB entry:
7EGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EGF entry

There are 10 chains in PDB entry 7EGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ILE 161	LYS 337
c	MET 1	TYR 127
d	VAL 843	LYS 1085
e	LEU 202	PRO 799
f	LEU 9	PRO 151
i	MET 12	LEU 132
j	THR 114	THR 218
k	SER 114	PHE 211
l	ASN 55	LYS 161
m	ARG 28	ARG 114

There are 52 helices in PDB entry 7EGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	179	187	Right-handed alpha
Helix 2	AA2	P	226	243	Right-handed alpha
Helix 3	AA3	P	269	277	Right-handed alpha
Helix 4	AA4	P	317	335	Right-handed alpha
Helix 5	AA5	c	2	16	Right-handed alpha
Helix 6	AA6	c	16	21	Right-handed alpha
Helix 7	AA7	c	28	56	Right-handed alpha
Helix 8	AA8	c	62	74	Right-handed alpha
Helix 9	AA9	c	76	87	Right-handed alpha
Helix 10	AB1	d	844	849	Right-handed alpha
Helix 11	AB2	d	849	855	Right-handed alpha
Helix 12	AB3	d	856	858	Right-handed 310
Helix 13	AB4	d	874	885	Right-handed alpha
Helix 14	AB5	d	898	922	Right-handed alpha
Helix 15	AB6	d	923	926	Right-handed 310
Helix 16	AB7	d	939	968	Right-handed alpha
Helix 17	AB8	d	1059	1069	Right-handed alpha
Helix 18	AB9	d	1076	1083	Right-handed alpha
Helix 19	AC1	e	213	228	Right-handed alpha
Helix 20	AC2	e	229	255	Right-handed alpha
Helix 21	AC3	e	256	268	Right-handed alpha
Helix 22	AC4	e	276	285	Right-handed alpha
Helix 23	AC5	e	287	292	Right-handed alpha
Helix 24	AC6	e	310	322	Right-handed alpha
Helix 25	AC7	e	329	334	Right-handed alpha
Helix 26	AC8	e	433	449	Right-handed alpha
Helix 27	AC9	e	509	516	Right-handed alpha
Helix 28	AD1	e	522	527	Right-handed alpha
Helix 29	AD2	f	16	27	Right-handed alpha
Helix 30	AD3	f	32	61	Right-handed alpha
Helix 31	AD4	f	67	76	Right-handed alpha
Helix 32	AD5	f	114	119	Right-handed alpha
Helix 33	AD6	i	18	26	Right-handed alpha
Helix 34	AD7	i	33	61	Right-handed alpha
Helix 35	AD8	i	67	77	Right-handed alpha
Helix 36	AD9	i	88	100	Right-handed alpha
Helix 37	AE1	j	115	124	Right-handed alpha
Helix 38	AE2	j	131	139	Right-handed alpha
Helix 39	AE3	j	148	177	Right-handed alpha
Helix 40	AE4	j	196	205	Right-handed alpha
Helix 41	AE5	k	116	127	Right-handed alpha
Helix 42	AE6	k	130	143	Right-handed alpha
Helix 43	AE7	k	147	176	Right-handed alpha
Helix 44	AE8	k	184	197	Right-handed alpha
Helix 45	AE9	l	61	69	Right-handed alpha
Helix 46	AF1	l	77	106	Right-handed alpha
Helix 47	AF2	l	113	123	Right-handed alpha
Helix 48	AF3	l	145	161	Right-handed alpha
Helix 49	AF4	m	34	43	Right-handed alpha
Helix 50	AF5	m	50	75	Right-handed alpha
Helix 51	AF6	m	82	91	Right-handed alpha
Helix 52	AF7	m	93	114	Right-handed alpha

There are 14 sheets in PDB entry 7EGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	190	193	first strand
Strand 2	P	197	204	anti-parallel
Strand 3	P	209	213	anti-parallel
Strand 4	P	218	224	anti-parallel
Strand 5	P	164	173	anti-parallel
Strand 6	P	253	263	anti-parallel
Strand 7	P	309	315	anti-parallel
Strand 8	P	300	304	anti-parallel
Strand 9	P	291	295	anti-parallel
Strand 10	P	281	283	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	111	113	first strand
Strand 2	c	25	27	anti-parallel
Strand 3	j	194	195	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	893	894	first strand
Strand 2	l	110	111	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	934	936	first strand
Strand 2	i	127	129	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	461	466	first strand
Strand 2	f	131	137	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	473	478	first strand
Strand 2	e	484	489	anti-parallel
Strand 3	e	493	498	anti-parallel
Strand 4	e	536	540	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	506	507	first strand
Strand 2	e	528	529	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	546	550	first strand
Strand 2	e	558	562	anti-parallel
Strand 3	e	567	570	anti-parallel
Strand 4	e	577	581	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	588	593	first strand
Strand 2	e	600	604	anti-parallel
Strand 3	e	609	612	anti-parallel
Strand 4	e	621	622	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	632	635	first strand
Strand 2	e	641	645	anti-parallel
Strand 3	e	651	655	anti-parallel
Strand 4	e	661	665	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	672	677	first strand
Strand 2	e	683	688	anti-parallel
Strand 3	e	693	697	anti-parallel
Strand 4	e	703	707	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	716	719	first strand
Strand 2	e	725	729	anti-parallel
Strand 3	e	734	739	anti-parallel
Strand 4	e	771	774	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	782	785	first strand
Strand 2	e	791	794	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	95	97	first strand
Strand 2	f	104	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EGF