Analysis of interatomic Contacts of Structural Units in PDB entry:
7EIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EIY entry

There are 4 chains in PDB entry 7EIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2ASP 254
A
 LEU 256SER 476
B
 SER 1ASP 254
B
 LEU 256GLN 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7EIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 24Right-handed alpha
Helix 2
AA2
A
25 28Right-handed 310
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
53 65Right-handed alpha
Helix 5
AA5
A
66 69Right-handed 310
Helix 6
AA6
A
86 100Right-handed alpha
Helix 7
AA7
A
109 128Right-handed alpha
Helix 8
AA8
A
130 134Right-handed 310
Helix 9
AA9
A
149 170Right-handed alpha
Helix 10
AB1
A
177 183Right-handed alpha
Helix 11
AB2
A
194 205Right-handed alpha
Helix 12
AB3
A
220 234Right-handed alpha
Helix 13
AB4
A
255 267Right-handed alpha
Helix 14
AB5
A
276 291Right-handed 310
Helix 15
AB6
A
292 296Right-handed 310
Helix 16
AB7
A
302 307Right-handed alpha
Helix 17
AB8
A
320 327Right-handed alpha
Helix 18
AB9
A
345 350Right-handed 310
Helix 19
AC1
A
358 394Right-handed alpha
Helix 20
AC2
A
416 429Right-handed alpha
Helix 21
AC3
A
456 476Right-handed alpha
Helix 22
AC4
B
3 24Right-handed alpha
Helix 23
AC5
B
25 28Right-handed 310
Helix 24
AC6
B
39 43Right-handed 310
Helix 25
AC7
B
53 64Right-handed alpha
Helix 26
AC8
B
65 69Right-handed 310
Helix 27
AC9
B
86 100Right-handed alpha
Helix 28
AD1
B
109 127Right-handed alpha
Helix 29
AD2
B
130 134Right-handed 310
Helix 30
AD3
B
149 173Right-handed alpha
Helix 31
AD4
B
177 183Right-handed alpha
Helix 32
AD5
B
194 205Right-handed alpha
Helix 33
AD6
B
220 234Right-handed alpha
Helix 34
AD7
B
255 267Right-handed alpha
Helix 35
AD8
B
276 291Right-handed 310
Helix 36
AD9
B
292 296Right-handed 310
Helix 37
AE1
B
302 307Right-handed alpha
Helix 38
AE2
B
320 327Right-handed alpha
Helix 39
AE3
B
345 350Right-handed 310
Helix 40
AE4
B
358 395Right-handed alpha
Helix 41
AE5
B
416 431Right-handed alpha
Helix 42
AE6
B
456 477Right-handed alpha
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There are 4 sheets in PDB entry 7EIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
298 301anti-parallel
Strand 4
A
269 273parallel
Strand 5
A
237 244parallel
Strand 6
A
185 190parallel
Strand 7
A
207 211parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
437 440anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
314 318anti-parallel
Strand 3
B
298 301anti-parallel
Strand 4
B
269 273parallel
Strand 5
B
237 244parallel
Strand 6
B
185 190parallel
Strand 7
B
207 211parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 399first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
443 449anti-parallel
Strand 4
B
437 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il