Analysis of interatomic Contacts of Structural Units in PDB entry:
7EJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EJC entry

There are 4 chains in PDB entry 7EJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 T 1 T 9
A
 PRO 22LYS 338
C
 PRO 22LYS 338
B
 PRO 22LYS 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7EJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 45Right-handed alpha
Helix 2
AA2
A
48 54Right-handed alpha
Helix 3
AA3
A
56 62Right-handed alpha
Helix 4
AA4
A
68 82Right-handed alpha
Helix 5
AA5
A
88 98Right-handed alpha
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
134 144Right-handed alpha
Helix 8
AA8
A
147 151Right-handed 310
Helix 9
AA9
A
167 179Right-handed alpha
Helix 10
AB1
A
181 187Right-handed alpha
Helix 11
AB2
A
196 214Right-handed alpha
Helix 12
AB3
A
225 232Right-handed alpha
Helix 13
AB4
A
237 260Right-handed alpha
Helix 14
AB5
A
289 296Right-handed alpha
Helix 15
AB6
C
34 45Right-handed alpha
Helix 16
AB7
C
48 54Right-handed alpha
Helix 17
AB8
C
56 62Right-handed alpha
Helix 18
AB9
C
68 82Right-handed alpha
Helix 19
AC1
C
89 98Right-handed alpha
Helix 20
AC2
C
106 113Right-handed alpha
Helix 21
AC3
C
134 144Right-handed alpha
Helix 22
AC4
C
147 151Right-handed 310
Helix 23
AC5
C
167 179Right-handed alpha
Helix 24
AC6
C
181 187Right-handed alpha
Helix 25
AC7
C
196 214Right-handed alpha
Helix 26
AC8
C
225 232Right-handed alpha
Helix 27
AC9
C
237 260Right-handed alpha
Helix 28
AD1
C
289 296Right-handed alpha
Helix 29
AD2
B
34 45Right-handed alpha
Helix 30
AD3
B
48 54Right-handed alpha
Helix 31
AD4
B
56 62Right-handed alpha
Helix 32
AD5
B
68 82Right-handed alpha
Helix 33
AD6
B
89 98Right-handed alpha
Helix 34
AD7
B
106 113Right-handed alpha
Helix 35
AD8
B
134 144Right-handed alpha
Helix 36
AD9
B
147 151Right-handed 310
Helix 37
AE1
B
167 179Right-handed alpha
Helix 38
AE2
B
181 187Right-handed alpha
Helix 39
AE3
B
196 214Right-handed alpha
Helix 40
AE4
B
225 232Right-handed alpha
Helix 41
AE5
B
237 260Right-handed alpha
Helix 42
AE6
B
289 296Right-handed alpha
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There are 3 sheets in PDB entry 7EJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
324 330anti-parallel
Strand 3
A
309 315anti-parallel
Strand 4
A
298 304anti-parallel
Strand 5
A
122 126parallel
Strand 6
A
262 267parallel
Strand 7
A
216 222parallel
Strand 8
A
156 161parallel
Strand 9
A
190 193parallel
Strand 10
B
87 88anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 88first strand
Strand 2
B
190 193anti-parallel
Strand 3
B
156 161parallel
Strand 4
B
216 222parallel
Strand 5
B
262 267parallel
Strand 6
B
122 126parallel
Strand 7
B
298 304parallel
Strand 8
B
309 315anti-parallel
Strand 9
B
324 330anti-parallel
Strand 10
B
333 334anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
156 161parallel
Strand 3
C
216 222parallel
Strand 4
C
262 267parallel
Strand 5
C
122 126parallel
Strand 6
C
298 304parallel
Strand 7
C
309 315anti-parallel
Strand 8
C
324 330anti-parallel
Strand 9
C
333 334anti-parallel
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