Analysis of interatomic Contacts of Structural Units in PDB entry:
7EJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EJW entry

There are 4 chains in PDB entry 7EJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7VAL 280
B
 HIS 8GLN 272
C
 LEU 142VAL 393
D
 LEU 142ASP 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 7EJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
53 59Right-handed alpha
Helix 3
AA3
A
65 71Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
103 114Right-handed alpha
Helix 8
AA8
A
115 117Right-handed 310
Helix 9
AA9
A
133 143Right-handed alpha
Helix 10
AB1
A
153 172Right-handed alpha
Helix 11
AB2
A
185 204Right-handed alpha
Helix 12
AB3
A
217 227Right-handed alpha
Helix 13
AB4
A
229 234Right-handed alpha
Helix 14
AB5
A
237 252Right-handed alpha
Helix 15
AB6
A
266 271Right-handed alpha
Helix 16
AB7
A
273 280Right-handed alpha
Helix 17
AB8
B
23 39Right-handed alpha
Helix 18
AB9
B
53 59Right-handed alpha
Helix 19
AC1
B
65 71Right-handed alpha
Helix 20
AC2
B
75 80Right-handed alpha
Helix 21
AC3
B
84 86Right-handed 310
Helix 22
AC4
B
96 101Right-handed alpha
Helix 23
AC5
B
103 114Right-handed alpha
Helix 24
AC6
B
115 118Right-handed 310
Helix 25
AC7
B
133 143Right-handed alpha
Helix 26
AC8
B
153 172Right-handed alpha
Helix 27
AC9
B
185 204Right-handed alpha
Helix 28
AD1
B
217 227Right-handed alpha
Helix 29
AD2
B
229 234Right-handed alpha
Helix 30
AD3
B
237 252Right-handed alpha
Helix 31
AD4
B
266 272Right-handed alpha
Helix 32
AD5
C
150 163Right-handed alpha
Helix 33
AD6
C
179 191Right-handed alpha
Helix 34
AD7
C
207 217Right-handed alpha
Helix 35
AD8
C
232 237Right-handed alpha
Helix 36
AD9
C
246 250Right-handed 310
Helix 37
AE1
C
251 265Right-handed alpha
Helix 38
AE2
C
289 296Right-handed alpha
Helix 39
AE3
C
300 308Right-handed alpha
Helix 40
AE4
C
316 322Right-handed 310
Helix 41
AE5
C
323 338Right-handed alpha
Helix 42
AE6
C
346 355Right-handed alpha
Helix 43
AE7
C
360 376Right-handed alpha
Helix 44
AE8
D
150 165Right-handed alpha
Helix 45
AE9
D
179 190Right-handed alpha
Helix 46
AF1
D
191 196Right-handed 310
Helix 47
AF2
D
207 217Right-handed alpha
Helix 48
AF3
D
232 237Right-handed alpha
Helix 49
AF4
D
246 250Right-handed 310
Helix 50
AF5
D
251 265Right-handed alpha
Helix 51
AF6
D
289 296Right-handed alpha
Helix 52
AF7
D
300 308Right-handed alpha
Helix 53
AF8
D
316 322Right-handed 310
Helix 54
AF9
D
323 338Right-handed alpha
Helix 55
AG1
D
346 356Right-handed alpha
Helix 56
AG2
D
360 376Right-handed alpha
Helix 57
AG3
D
382 386Right-handed 310
Helix 58
AG4
D
387 391Right-handed 310
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There are 8 sheets in PDB entry 7EJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
88 90anti-parallel
Strand 3
A
43 47parallel
Strand 4
A
124 128parallel
Strand 5
A
12 16parallel
Strand 6
A
145 150parallel
Strand 7
A
175 183parallel
Strand 8
A
207 215parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
88 90anti-parallel
Strand 3
B
42 47parallel
Strand 4
B
123 128parallel
Strand 5
B
11 16parallel
Strand 6
B
145 150parallel
Strand 7
B
175 183parallel
Strand 8
B
207 215parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 202first strand
Strand 2
C
241 245parallel
Strand 3
C
281 286parallel
Strand 4
C
170 173parallel
Strand 5
C
310 313parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
276 277anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 345first strand
Strand 2
C
379 381parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 202first strand
Strand 2
D
241 245parallel
Strand 3
D
281 286parallel
Strand 4
D
170 173parallel
Strand 5
D
312 313parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
266 267first strand
Strand 2
D
276 277anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 345first strand
Strand 2
D
379 381parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il