Analysis of interatomic Contacts of Structural Units in PDB entry:
7EKI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EKI entry

There are 5 chains in PDB entry 7EKI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 23	ALA 502
B	GLY 23	ALA 502
C	GLY 23	ALA 502
D	GLY 23	ALA 502
E	GLY 23	ALA 502

There are 50 helices in PDB entry 7EKI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	230	237	Right-handed alpha
Helix 3	AA3	A	237	249	Right-handed alpha
Helix 4	AA4	A	250	252	Right-handed 310
Helix 5	AA5	A	260	281	Right-handed alpha
Helix 6	AA6	A	291	319	Right-handed alpha
Helix 7	AA7	A	328	336	Right-handed alpha
Helix 8	AA8	A	338	343	Right-handed alpha
Helix 9	AA9	A	433	489	Right-handed alpha
Helix 10	AB1	A	492	501	Right-handed alpha
Helix 11	AB2	B	24	34	Right-handed alpha
Helix 12	AB3	B	230	237	Right-handed alpha
Helix 13	AB4	B	237	249	Right-handed alpha
Helix 14	AB5	B	250	252	Right-handed 310
Helix 15	AB6	B	260	281	Right-handed alpha
Helix 16	AB7	B	291	319	Right-handed alpha
Helix 17	AB8	B	328	336	Right-handed alpha
Helix 18	AB9	B	338	343	Right-handed alpha
Helix 19	AC1	B	433	489	Right-handed alpha
Helix 20	AC2	B	492	501	Right-handed alpha
Helix 21	AC3	C	24	34	Right-handed alpha
Helix 22	AC4	C	230	237	Right-handed alpha
Helix 23	AC5	C	237	249	Right-handed alpha
Helix 24	AC6	C	250	252	Right-handed 310
Helix 25	AC7	C	260	281	Right-handed alpha
Helix 26	AC8	C	291	319	Right-handed alpha
Helix 27	AC9	C	328	336	Right-handed alpha
Helix 28	AD1	C	338	343	Right-handed alpha
Helix 29	AD2	C	433	489	Right-handed alpha
Helix 30	AD3	C	492	501	Right-handed alpha
Helix 31	AD4	D	24	34	Right-handed alpha
Helix 32	AD5	D	230	237	Right-handed alpha
Helix 33	AD6	D	237	249	Right-handed alpha
Helix 34	AD7	D	250	252	Right-handed 310
Helix 35	AD8	D	260	281	Right-handed alpha
Helix 36	AD9	D	291	319	Right-handed alpha
Helix 37	AE1	D	328	336	Right-handed alpha
Helix 38	AE2	D	338	343	Right-handed alpha
Helix 39	AE3	D	433	489	Right-handed alpha
Helix 40	AE4	D	492	501	Right-handed alpha
Helix 41	AE5	E	24	34	Right-handed alpha
Helix 42	AE6	E	230	237	Right-handed alpha
Helix 43	AE7	E	237	249	Right-handed alpha
Helix 44	AE8	E	250	252	Right-handed 310
Helix 45	AE9	E	260	281	Right-handed alpha
Helix 46	AF1	E	291	319	Right-handed alpha
Helix 47	AF2	E	328	336	Right-handed alpha
Helix 48	AF3	E	338	343	Right-handed alpha
Helix 49	AF4	E	433	489	Right-handed alpha
Helix 50	AF5	E	492	501	Right-handed alpha

There are 20 sheets in PDB entry 7EKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	71	88	anti-parallel
Strand 5	A	143	149	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	71	88	anti-parallel
Strand 5	A	51	66	anti-parallel
Strand 6	A	178	182	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	218	228	anti-parallel
Strand 4	A	196	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	218	228	anti-parallel
Strand 4	A	203	207	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	71	88	anti-parallel
Strand 5	B	143	149	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	71	88	anti-parallel
Strand 5	B	51	66	anti-parallel
Strand 6	B	178	182	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	218	228	anti-parallel
Strand 4	B	196	200	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	218	228	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	135	140	anti-parallel
Strand 4	C	71	88	anti-parallel
Strand 5	C	143	149	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	135	140	anti-parallel
Strand 4	C	71	88	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	178	182	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	218	228	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	218	228	anti-parallel
Strand 4	C	203	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	135	140	anti-parallel
Strand 4	D	71	88	anti-parallel
Strand 5	D	143	149	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	135	140	anti-parallel
Strand 4	D	71	88	anti-parallel
Strand 5	D	51	66	anti-parallel
Strand 6	D	178	182	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	218	228	anti-parallel
Strand 4	D	196	200	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	218	228	anti-parallel
Strand 4	D	203	207	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	135	140	anti-parallel
Strand 4	E	71	88	anti-parallel
Strand 5	E	143	149	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	135	140	anti-parallel
Strand 4	E	71	88	anti-parallel
Strand 5	E	51	66	anti-parallel
Strand 6	E	178	182	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	161	170	anti-parallel
Strand 3	E	218	228	anti-parallel
Strand 4	E	196	200	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	161	170	anti-parallel
Strand 3	E	218	228	anti-parallel
Strand 4	E	203	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EKI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EKI