Analysis of interatomic Contacts of Structural Units in PDB entry:
7EKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EKJ entry

There is 1 chain in PDB entry 7EKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 93GLN 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7EKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 97Right-handed 310
Helix 2
AA2
A
98 104Right-handed alpha
Helix 3
AA3
A
136 146Right-handed alpha
Helix 4
AA4
A
161 173Right-handed alpha
Helix 5
AA5
A
183 196Right-handed alpha
Helix 6
AA6
A
197 201Right-handed 310
Helix 7
AA7
A
208 214Right-handed alpha
Helix 8
AA8
A
229 234Right-handed alpha
Helix 9
AA9
A
238 250Right-handed alpha
Helix 10
AB1
A
291 307Right-handed alpha
Helix 11
AB2
A
321 334Right-handed alpha
Helix 12
AB3
A
348 353Right-handed 310
Helix 13
AB4
A
354 369Right-handed alpha
Helix 14
AB5
A
370 372Right-handed 310
Helix 15
AB6
A
373 385Right-handed alpha
Helix 16
AB7
A
409 431Right-handed alpha
Helix 17
AB8
A
434 439Right-handed 310
Helix 18
AB9
A
456 473Right-handed alpha
Helix 19
AC1
A
490 494Right-handed 310
Helix 20
AC2
A
518 527Right-handed alpha
Helix 21
AC3
A
539 553Right-handed alpha
Helix 22
AC4
A
556 568Right-handed alpha
Helix 23
AC5
A
586 596Right-handed alpha
Helix 24
AC6
A
598 600Right-handed 310
Helix 25
AC7
A
606 621Right-handed alpha
Helix 26
AC8
A
626 640Right-handed alpha
Helix 27
AC9
A
645 649Right-handed 310
Helix 28
AD1
A
650 656Right-handed alpha
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There are 4 sheets in PDB entry 7EKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
386 390parallel
Strand 4
A
397 400anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 446first strand
Strand 2
A
449 455anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
487 488anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
500 506anti-parallel
Strand 3
A
602 605anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
666 669anti-parallel
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