Analysis of interatomic Contacts of Structural Units in PDB entry:
7EKL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EKL entry

There are 2 chains in PDB entry 7EKL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 238GLY 827
B
 THR 238GLY 827
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 7EKL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 246Right-handed alpha
Helix 2
AA2
A
248 253Right-handed 310
Helix 3
AA3
A
258 263Right-handed alpha
Helix 4
AA4
A
264 295Right-handed alpha
Helix 5
AA5
A
298 317Right-handed alpha
Helix 6
AA6
A
328 335Right-handed alpha
Helix 7
AA7
A
337 347Right-handed alpha
Helix 8
AA8
A
357 364Right-handed alpha
Helix 9
AA9
A
365 373Right-handed alpha
Helix 10
AB1
A
376 385Right-handed alpha
Helix 11
AB2
A
391 404Right-handed alpha
Helix 12
AB3
A
412 427Right-handed alpha
Helix 13
AB4
A
431 447Right-handed alpha
Helix 14
AB5
A
450 456Right-handed alpha
Helix 15
AB6
A
459 466Right-handed alpha
Helix 16
AB7
A
470 478Right-handed alpha
Helix 17
AB8
A
480 485Right-handed alpha
Helix 18
AB9
A
487 492Right-handed alpha
Helix 19
AC1
A
493 499Right-handed alpha
Helix 20
AC2
A
501 522Right-handed alpha
Helix 21
AC3
A
526 535Right-handed alpha
Helix 22
AC4
A
536 541Right-handed alpha
Helix 23
AC5
A
542 547Right-handed alpha
Helix 24
AC6
A
550 569Right-handed alpha
Helix 25
AC7
A
628 636Right-handed alpha
Helix 26
AC8
A
658 663Right-handed alpha
Helix 27
AC9
A
679 685Right-handed alpha
Helix 28
AD1
A
692 700Right-handed alpha
Helix 29
AD2
A
705 710Right-handed alpha
Helix 30
AD3
A
714 718Right-handed 310
Helix 31
AD4
A
721 725Right-handed 310
Helix 32
AD5
A
730 744Right-handed alpha
Helix 33
AD6
A
762 770Right-handed alpha
Helix 34
AD7
A
808 813Right-handed alpha
Helix 35
AD8
A
816 827Right-handed alpha
Helix 36
AD9
B
241 246Right-handed alpha
Helix 37
AE1
B
248 253Right-handed 310
Helix 38
AE2
B
258 263Right-handed alpha
Helix 39
AE3
B
264 295Right-handed alpha
Helix 40
AE4
B
298 317Right-handed alpha
Helix 41
AE5
B
328 335Right-handed alpha
Helix 42
AE6
B
337 347Right-handed alpha
Helix 43
AE7
B
357 364Right-handed alpha
Helix 44
AE8
B
365 373Right-handed alpha
Helix 45
AE9
B
376 385Right-handed alpha
Helix 46
AF1
B
391 404Right-handed alpha
Helix 47
AF2
B
412 427Right-handed alpha
Helix 48
AF3
B
431 447Right-handed alpha
Helix 49
AF4
B
450 456Right-handed alpha
Helix 50
AF5
B
459 466Right-handed alpha
Helix 51
AF6
B
470 478Right-handed alpha
Helix 52
AF7
B
480 485Right-handed alpha
Helix 53
AF8
B
487 492Right-handed alpha
Helix 54
AF9
B
493 499Right-handed alpha
Helix 55
AG1
B
501 522Right-handed alpha
Helix 56
AG2
B
526 535Right-handed alpha
Helix 57
AG3
B
536 541Right-handed alpha
Helix 58
AG4
B
542 547Right-handed alpha
Helix 59
AG5
B
550 569Right-handed alpha
Helix 60
AG6
B
628 636Right-handed alpha
Helix 61
AG7
B
658 663Right-handed alpha
Helix 62
AG8
B
679 685Right-handed alpha
Helix 63
AG9
B
692 700Right-handed alpha
Helix 64
AH1
B
705 710Right-handed alpha
Helix 65
AH2
B
714 718Right-handed 310
Helix 66
AH3
B
721 725Right-handed 310
Helix 67
AH4
B
730 744Right-handed alpha
Helix 68
AH5
B
762 770Right-handed alpha
Helix 69
AH6
B
808 813Right-handed alpha
Helix 70
AH7
B
816 827Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7EKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 613first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
652 653anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
747 750parallel
Strand 3
A
777 781parallel
Strand 4
A
618 622parallel
Strand 5
A
793 797parallel
Strand 6
A
802 806anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 613first strand
Strand 2
B
590 597anti-parallel
Strand 3
B
644 649anti-parallel
Strand 4
B
652 653anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 669first strand
Strand 2
B
747 750parallel
Strand 3
B
777 781parallel
Strand 4
B
618 622parallel
Strand 5
B
793 797parallel
Strand 6
B
802 806anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il