Analysis of interatomic Contacts of Structural Units in PDB entry:
7EKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EKM entry

There are 2 chains in PDB entry 7EKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 244GLY 827
B
 ARG 244GLY 827
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 7EKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 253Right-handed 310
Helix 2
AA2
A
263 268Right-handed alpha
Helix 3
AA3
A
274 278Right-handed 310
Helix 4
AA4
A
281 295Right-handed alpha
Helix 5
AA5
A
298 302Right-handed 310
Helix 6
AA6
A
306 316Right-handed alpha
Helix 7
AA7
A
334 339Right-handed alpha
Helix 8
AA8
A
340 345Right-handed alpha
Helix 9
AA9
A
370 375Right-handed alpha
Helix 10
AB1
A
376 390Right-handed alpha
Helix 11
AB2
A
393 397Right-handed 310
Helix 12
AB3
A
398 402Right-handed 310
Helix 13
AB4
A
412 433Right-handed alpha
Helix 14
AB5
A
435 440Right-handed alpha
Helix 15
AB6
A
442 454Right-handed alpha
Helix 16
AB7
A
459 464Right-handed alpha
Helix 17
AB8
A
482 486Right-handed 310
Helix 18
AB9
A
496 499Right-handed 310
Helix 19
AC1
A
500 506Right-handed alpha
Helix 20
AC2
A
512 522Right-handed alpha
Helix 21
AC3
A
530 542Right-handed alpha
Helix 22
AC4
A
543 545Right-handed 310
Helix 23
AC5
A
549 560Right-handed alpha
Helix 24
AC6
A
561 566Right-handed alpha
Helix 25
AC7
A
628 636Right-handed alpha
Helix 26
AC8
A
658 663Right-handed alpha
Helix 27
AC9
A
679 685Right-handed alpha
Helix 28
AD1
A
692 700Right-handed alpha
Helix 29
AD2
A
705 710Right-handed alpha
Helix 30
AD3
A
714 718Right-handed 310
Helix 31
AD4
A
721 725Right-handed 310
Helix 32
AD5
A
730 744Right-handed alpha
Helix 33
AD6
A
762 770Right-handed alpha
Helix 34
AD7
A
808 813Right-handed alpha
Helix 35
AD8
A
816 827Right-handed alpha
Helix 36
AD9
B
249 253Right-handed 310
Helix 37
AE1
B
263 268Right-handed alpha
Helix 38
AE2
B
274 278Right-handed 310
Helix 39
AE3
B
281 295Right-handed alpha
Helix 40
AE4
B
298 302Right-handed 310
Helix 41
AE5
B
306 316Right-handed alpha
Helix 42
AE6
B
334 339Right-handed alpha
Helix 43
AE7
B
340 345Right-handed alpha
Helix 44
AE8
B
370 375Right-handed alpha
Helix 45
AE9
B
376 390Right-handed alpha
Helix 46
AF1
B
393 397Right-handed 310
Helix 47
AF2
B
398 402Right-handed 310
Helix 48
AF3
B
412 433Right-handed alpha
Helix 49
AF4
B
435 440Right-handed alpha
Helix 50
AF5
B
442 454Right-handed alpha
Helix 51
AF6
B
459 464Right-handed alpha
Helix 52
AF7
B
482 486Right-handed 310
Helix 53
AF8
B
496 499Right-handed 310
Helix 54
AF9
B
500 506Right-handed alpha
Helix 55
AG1
B
512 522Right-handed alpha
Helix 56
AG2
B
530 542Right-handed alpha
Helix 57
AG3
B
543 545Right-handed 310
Helix 58
AG4
B
549 560Right-handed alpha
Helix 59
AG5
B
561 566Right-handed alpha
Helix 60
AG6
B
628 636Right-handed alpha
Helix 61
AG7
B
658 663Right-handed alpha
Helix 62
AG8
B
679 685Right-handed alpha
Helix 63
AG9
B
692 700Right-handed alpha
Helix 64
AH1
B
705 710Right-handed alpha
Helix 65
AH2
B
714 718Right-handed 310
Helix 66
AH3
B
721 725Right-handed 310
Helix 67
AH4
B
730 744Right-handed alpha
Helix 68
AH5
B
762 770Right-handed alpha
Helix 69
AH6
B
808 813Right-handed alpha
Helix 70
AH7
B
816 827Right-handed alpha
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There are 4 sheets in PDB entry 7EKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 613first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
747 750parallel
Strand 3
A
777 781parallel
Strand 4
A
618 622parallel
Strand 5
A
793 797parallel
Strand 6
A
802 806anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 613first strand
Strand 2
B
590 597anti-parallel
Strand 3
B
644 649anti-parallel
Strand 4
B
652 653anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
666 669first strand
Strand 2
B
747 750parallel
Strand 3
B
777 781parallel
Strand 4
B
618 622parallel
Strand 5
B
793 797parallel
Strand 6
B
802 806anti-parallel
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