Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 7EKN entry
There are 8 chains in PDB entry 7EKN
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
B
|
GLN 1 | LYS 41 |
A
|
SER 754 | VAL 796 |
D
|
GLN 1 | LYS 41 |
C
|
ASP 755 | VAL 796 |
F
|
GLN 1 | LYS 42 |
E
|
ASP 755 | VAL 796 |
H
|
ILE 2 | LYS 41 |
G
|
ILE 756 | VAL 796 |
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There are 8
helices in PDB entry 7EKN. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | B
| 1 |
41 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 756 |
796 | Right-handed alpha |
| Helix 3 |
AA3 | D
| 2 |
41 | Right-handed alpha |
| Helix 4 |
AA4 | C
| 756 |
796 | Right-handed alpha |
| Helix 5 |
AA5 | F
| 2 |
41 | Right-handed alpha |
| Helix 6 |
AA6 | E
| 756 |
794 | Right-handed alpha |
| Helix 7 |
AA7 | H
| 3 |
41 | Right-handed alpha |
| Helix 8 |
AA8 | G
| 757 |
794 | Right-handed alpha |
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There are no sheets in PDB entry
7EKN
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il