Analysis of interatomic Contacts of Structural Units in PDB entry:
7EKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EKQ entry

There are 19 chains in PDB entry 7EKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 12ASN 238
B
PRO 42VAL 234
C
PRO 17GLU 190
D
PRO 42VAL 234
E
PRO 17GLU 190
F
VAL 54LYS 225
G
PRO 17ASN 195
H
SER 345GLN 492
I
TYR 8LYS 224
J
SER 345ALA 509
K
ARG 1PRO 233
L
CYS 41PRO 227
M
LYS 346ALA 478
N
ASP 11ALA 348
O
ALA 1PRO 162
P
ALA 9GLU 103
Q
GLU 1ALA 212
R
ALA 1SER 194
S
ALA 1SER 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 7EKQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
31 39Right-handed alpha
Helix 2
AA2
A
49 67Right-handed alpha
Helix 3
AA3
A
84 94Right-handed alpha
Helix 4
AA4
A
111 118Right-handed alpha
Helix 5
AA5
A
144 170Right-handed alpha
Helix 6
AA6
A
173 181Right-handed alpha
Helix 7
AA7
A
188 196Right-handed alpha
Helix 8
AA8
A
211 222Right-handed alpha
Helix 9
AA9
B
43 58Right-handed alpha
Helix 10
AB1
B
70 88Right-handed alpha
Helix 11
AB2
B
103 116Right-handed alpha
Helix 12
AB3
B
133 139Right-handed alpha
Helix 13
AB4
B
165 192Right-handed alpha
Helix 14
AB5
B
195 203Right-handed alpha
Helix 15
AB6
B
209 217Right-handed alpha
Helix 16
AB7
C
18 23Right-handed alpha
Helix 17
AB8
C
34 52Right-handed alpha
Helix 18
AB9
C
67 80Right-handed alpha
Helix 19
AC1
C
96 103Right-handed alpha
Helix 20
AC2
C
129 152Right-handed alpha
Helix 21
AC3
C
158 164Right-handed alpha
Helix 22
AC4
C
173 181Right-handed alpha
Helix 23
AC5
D
44 59Right-handed alpha
Helix 24
AC6
D
70 82Right-handed alpha
Helix 25
AC7
D
104 115Right-handed alpha
Helix 26
AC8
D
130 139Right-handed alpha
Helix 27
AC9
D
165 192Right-handed alpha
Helix 28
AD1
D
194 202Right-handed alpha
Helix 29
AD2
D
209 217Right-handed alpha
Helix 30
AD3
E
21 24Right-handed 310
Helix 31
AD4
E
36 52Right-handed alpha
Helix 32
AD5
E
67 79Right-handed alpha
Helix 33
AD6
E
96 102Right-handed alpha
Helix 34
AD7
E
129 152Right-handed alpha
Helix 35
AD8
E
158 166Right-handed alpha
Helix 36
AD9
E
173 180Right-handed alpha
Helix 37
AE1
F
55 60Right-handed alpha
Helix 38
AE2
F
70 88Right-handed alpha
Helix 39
AE3
F
103 116Right-handed alpha
Helix 40
AE4
F
132 139Right-handed alpha
Helix 41
AE5
F
165 192Right-handed alpha
Helix 42
AE6
F
194 202Right-handed alpha
Helix 43
AE7
F
211 217Right-handed alpha
Helix 44
AE8
G
18 24Right-handed alpha
Helix 45
AE9
G
34 52Right-handed alpha
Helix 46
AF1
G
67 81Right-handed alpha
Helix 47
AF2
G
96 103Right-handed alpha
Helix 48
AF3
G
129 152Right-handed alpha
Helix 49
AF4
G
158 166Right-handed alpha
Helix 50
AF5
H
358 370Right-handed alpha
Helix 51
AF6
H
388 394Right-handed alpha
Helix 52
AF7
H
420 446Right-handed alpha
Helix 53
AF8
H
449 457Right-handed alpha
Helix 54
AF9
H
464 472Right-handed alpha
Helix 55
AG1
H
480 490Right-handed alpha
Helix 56
AG2
I
27 35Right-handed alpha
Helix 57
AG3
I
48 60Right-handed alpha
Helix 58
AG4
I
91 101Right-handed alpha
Helix 59
AG5
I
118 124Right-handed alpha
Helix 60
AG6
I
152 179Right-handed alpha
Helix 61
AG7
I
181 189Right-handed alpha
Helix 62
AG8
I
198 205Right-handed alpha
Helix 63
AG9
I
216 224Right-handed alpha
Helix 64
AH1
J
358 368Right-handed alpha
Helix 65
AH2
J
385 394Right-handed alpha
Helix 66
AH3
J
422 446Right-handed alpha
Helix 67
AH4
J
449 455Right-handed alpha
Helix 68
AH5
J
464 472Right-handed alpha
Helix 69
AH6
J
479 509Right-handed alpha
Helix 70
AH7
K
2 13Right-handed alpha
Helix 71
AH8
K
19 27Right-handed alpha
Helix 72
AH9
K
37 55Right-handed alpha
Helix 73
AI1
K
79 90Right-handed alpha
Helix 74
AI2
K
108 111Right-handed 310
Helix 75
AI3
K
145 169Right-handed alpha
Helix 76
AI4
K
171 178Right-handed alpha
Helix 77
AI5
K
189 194Right-handed alpha
Helix 78
AI6
K
210 214Right-handed 310
Helix 79
AI7
L
53 61Right-handed alpha
Helix 80
AI8
L
71 89Right-handed alpha
Helix 81
AI9
L
104 117Right-handed alpha
Helix 82
AJ1
L
130 134Right-handed 310
Helix 83
AJ2
L
135 139Right-handed 310
Helix 84
AJ3
L
166 193Right-handed alpha
Helix 85
AJ4
L
195 203Right-handed alpha
Helix 86
AJ5
L
212 217Right-handed alpha
Helix 87
AJ6
M
359 371Right-handed alpha
Helix 88
AJ7
M
385 394Right-handed alpha
Helix 89
AJ8
M
420 447Right-handed alpha
Helix 90
AJ9
M
449 457Right-handed alpha
Helix 91
AK1
M
466 471Right-handed alpha
Helix 92
AK2
N
19 27Right-handed alpha
Helix 93
AK3
N
37 54Right-handed alpha
Helix 94
AK4
N
81 93Right-handed alpha
Helix 95
AK5
N
110 115Right-handed alpha
Helix 96
AK6
N
144 170Right-handed alpha
Helix 97
AK7
N
172 180Right-handed alpha
Helix 98
AK8
N
190 195Right-handed alpha
Helix 99
AK9
N
204 218Right-handed alpha
Helix 100
AL1
N
219 224Right-handed alpha
Helix 101
AL2
N
225 263Right-handed alpha
Helix 102
AL3
N
269 277Right-handed alpha
Helix 103
AL4
O
1 6Right-handed 310
Helix 104
AL5
O
7 12Right-handed alpha
Helix 105
AL6
O
16 33Right-handed alpha
Helix 106
AL7
O
42 50Right-handed alpha
Helix 107
AL8
O
55 63Right-handed alpha
Helix 108
AL9
O
66 81Right-handed alpha
Helix 109
AM1
O
96 114Right-handed alpha
Helix 110
AM2
O
119 131Right-handed alpha
Helix 111
AM3
O
131 137Right-handed alpha
Helix 112
AM4
O
143 156Right-handed alpha
Helix 113
AM5
P
33 38Right-handed 310
Helix 114
AM6
R
25 29Right-handed 310
Helix 115
AM7
R
97 101Right-handed 310
Helix 116
AM8
S
97 101Right-handed 310
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There are 47 sheets in PDB entry 7EKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 45first strand
Strand 2
A
72 78parallel
Strand 3
A
100 108parallel
Strand 4
A
124 126parallel
Strand 5
A
200 201parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 134first strand
Strand 2
A
185 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 140first strand
Strand 2
I
150 151anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
62 66first strand
Strand 2
B
93 98parallel
Strand 3
B
121 125parallel
Strand 4
B
146 147parallel
Strand 5
B
221 222parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
128 129first strand
Strand 2
B
152 155parallel
Strand 3
B
206 208anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
160 161first strand
Strand 2
H
418 419anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
26 30first strand
Strand 2
C
57 63parallel
Strand 3
C
85 94parallel
Strand 4
C
116 119parallel
Strand 5
C
170 172anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
26 30first strand
Strand 2
C
57 63parallel
Strand 3
C
85 94parallel
Strand 4
C
110 111parallel
Strand 5
C
185 186parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
62 64first strand
Strand 2
D
93 99parallel
Strand 3
D
121 129parallel
Strand 4
D
152 155parallel
Strand 5
D
206 208anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
62 64first strand
Strand 2
D
93 99parallel
Strand 3
D
121 129parallel
Strand 4
D
146 147parallel
Strand 5
D
221 222parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
160 164first strand
Strand 2
M
415 419anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
26 30first strand
Strand 2
E
57 63parallel
Strand 3
E
85 94parallel
Strand 4
E
116 119parallel
Strand 5
E
170 172anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
26 30first strand
Strand 2
E
57 63parallel
Strand 3
E
85 94parallel
Strand 4
E
109 111parallel
Strand 5
E
185 186parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
62 66first strand
Strand 2
F
94 99parallel
Strand 3
F
122 130parallel
Strand 4
F
145 147parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
62 66first strand
Strand 2
F
94 99parallel
Strand 3
F
122 130parallel
Strand 4
F
152 155parallel
Strand 5
F
206 208anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
26 30first strand
Strand 2
G
57 63parallel
Strand 3
G
85 93parallel
Strand 4
G
109 111parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
117 118first strand
Strand 2
G
171 172anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
124 126first strand
Strand 2
J
417 419anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
347 352first strand
Strand 2
H
375 380parallel
Strand 3
H
400 402parallel
Strand 4
H
476 477parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
408 410first strand
Strand 2
H
461 463anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
37 40first strand
Strand 2
I
70 76parallel
Strand 3
I
107 115parallel
Strand 4
I
132 133parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
139 141first strand
Strand 2
I
194 196anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
348 352first strand
Strand 2
J
376 380parallel
Strand 3
J
400 403parallel
Strand 4
J
476 478parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
383 384first strand
Strand 2
J
407 410parallel
Strand 3
J
461 462anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
29 32first strand
Strand 2
K
59 65parallel
Strand 3
K
97 106parallel
Strand 4
K
129 130parallel
Strand 5
K
184 185anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
29 32first strand
Strand 2
K
59 65parallel
Strand 3
K
97 106parallel
Strand 4
K
121 123parallel
Strand 5
K
198 199parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
45 46first strand
Strand 2
L
51 52anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
63 66first strand
Strand 2
L
93 97parallel
Strand 3
L
121 125parallel
Strand 4
L
146 148parallel
Strand 5
L
222 223parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
128 129first strand
Strand 2
L
153 156parallel
Strand 3
L
207 209anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
348 354first strand
Strand 2
M
376 384parallel
Strand 3
M
407 410parallel
Strand 4
M
461 463anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
348 354first strand
Strand 2
M
376 384parallel
Strand 3
M
400 402parallel
Strand 4
M
476 477parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
29 32first strand
Strand 2
N
60 66parallel
Strand 3
N
97 106parallel
Strand 4
N
128 131parallel
Strand 5
N
184 186anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
29 32first strand
Strand 2
N
60 66parallel
Strand 3
N
97 106parallel
Strand 4
N
122 123parallel
Strand 5
N
199 200parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
37 38first strand
Strand 2
O
94 95parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
72 73first strand
Strand 2
P
51 55anti-parallel
Strand 3
P
22 26anti-parallel
Strand 4
P
88 94anti-parallel
Strand 5
P
81 85anti-parallel
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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
2 4first strand
Strand 2
Q
83 86parallel
Strand 3
Q
92 96anti-parallel
Strand 4
Q
19 22anti-parallel
Strand 5
Q
47 52anti-parallel
Strand 6
Q
72 73anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
103 104first strand
Strand 2
Q
119 120anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
181 184first strand
Strand 2
Q
151 158anti-parallel
Strand 3
Q
124 129anti-parallel
Strand 4
Q
199 204anti-parallel
Strand 5
Q
190 193anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
160 163first strand
Strand 2
Q
171 173anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
12 13first strand
Strand 2
S
191 192anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
17 21first strand
Strand 2
R
78 84anti-parallel
Strand 3
R
71 75anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
62 65first strand
Strand 2
R
88 92anti-parallel
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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
163 164first strand
Strand 2
R
136 141anti-parallel
Strand 3
R
108 110anti-parallel
Strand 4
R
179 184anti-parallel
Strand 5
R
173 176anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
145 146first strand
Strand 2
R
153 154anti-parallel
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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
48 50first strand
Strand 2
S
18 21anti-parallel
Strand 3
S
78 83anti-parallel
Strand 4
S
70 75anti-parallel
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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
138 141first strand
Strand 2
S
108 110anti-parallel
Strand 3
S
179 184anti-parallel
Strand 4
S
172 176anti-parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
146 147first strand
Strand 2
S
152 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il