Analysis of interatomic Contacts of Structural Units in PDB entry:
7EME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7EME entry

There are 2 chains in PDB entry 7EME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 35	VAL 447
B	LYS 36	VAL 447

There are 33 helices in PDB entry 7EME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	96	106	Right-handed alpha
Helix 3	AA3	A	133	148	Right-handed alpha
Helix 4	AA4	A	151	159	Right-handed alpha
Helix 5	AA5	A	162	170	Right-handed alpha
Helix 6	AA6	A	173	189	Right-handed alpha
Helix 7	AA7	A	191	195	Right-handed 310
Helix 8	AA8	A	196	204	Right-handed alpha
Helix 9	AA9	A	205	207	Right-handed 310
Helix 10	AB1	A	218	228	Right-handed alpha
Helix 11	AB2	A	270	277	Right-handed alpha
Helix 12	AB3	A	284	294	Right-handed alpha
Helix 13	AB4	A	347	355	Right-handed alpha
Helix 14	AB5	A	357	372	Right-handed alpha
Helix 15	AB6	A	407	414	Right-handed alpha
Helix 16	AB7	A	423	427	Right-handed 310
Helix 17	AB8	A	432	445	Right-handed alpha
Helix 18	AB9	B	44	57	Right-handed alpha
Helix 19	AC1	B	96	106	Right-handed alpha
Helix 20	AC2	B	133	150	Right-handed alpha
Helix 21	AC3	B	151	159	Right-handed alpha
Helix 22	AC4	B	162	170	Right-handed alpha
Helix 23	AC5	B	173	189	Right-handed alpha
Helix 24	AC6	B	191	195	Right-handed 310
Helix 25	AC7	B	196	204	Right-handed alpha
Helix 26	AC8	B	218	229	Right-handed alpha
Helix 27	AC9	B	270	277	Right-handed alpha
Helix 28	AD1	B	284	294	Right-handed alpha
Helix 29	AD2	B	347	356	Right-handed alpha
Helix 30	AD3	B	357	372	Right-handed alpha
Helix 31	AD4	B	407	414	Right-handed alpha
Helix 32	AD5	B	423	427	Right-handed 310
Helix 33	AD6	B	432	445	Right-handed alpha

There are 12 sheets in PDB entry 7EME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	60	64	parallel
Strand 3	A	37	41	parallel
Strand 4	A	264	267	parallel
Strand 5	A	419	421	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	84	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	212	214	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	117	120	anti-parallel
Strand 3	A	317	320	parallel
Strand 4	A	326	329	anti-parallel
Strand 5	A	339	346	anti-parallel
Strand 6	A	299	306	anti-parallel
Strand 7	A	380	385	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	249	254	anti-parallel
Strand 3	A	240	246	anti-parallel
Strand 4	A	278	280	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	399	400	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	235	first strand
Strand 2	B	60	64	parallel
Strand 3	B	37	41	parallel
Strand 4	B	264	267	parallel
Strand 5	B	419	421	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	84	86	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	212	214	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	316	320	parallel
Strand 4	B	326	329	anti-parallel
Strand 5	B	339	346	anti-parallel
Strand 6	B	299	306	anti-parallel
Strand 7	B	380	385	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	249	254	anti-parallel
Strand 3	B	240	246	anti-parallel
Strand 4	B	278	280	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	399	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7EME

Analysis of interatomic Contacts of Structural Units in PDB entry:
7EME