Analysis of interatomic Contacts of Structural Units in PDB entry:
7EMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EMO entry

There are 3 chains in PDB entry 7EMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ALA 184
B
 MET 1ALA 183
C
 MET 1ALA 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7EMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
101 105Right-handed 310
Helix 4
AA4
A
124 130Right-handed 310
Helix 5
AA5
A
131 143Right-handed alpha
Helix 6
AA6
A
145 160Right-handed alpha
Helix 7
AA7
A
168 175Right-handed alpha
Helix 8
AA8
B
10 12Right-handed 310
Helix 9
AA9
B
15 28Right-handed alpha
Helix 10
AB1
B
124 130Right-handed 310
Helix 11
AB2
B
131 143Right-handed alpha
Helix 12
AB3
B
145 160Right-handed alpha
Helix 13
AB4
B
168 175Right-handed alpha
Helix 14
AB5
C
10 12Right-handed 310
Helix 15
AB6
C
15 28Right-handed alpha
Helix 16
AB7
C
102 105Right-handed 310
Helix 17
AB8
C
124 130Right-handed 310
Helix 18
AB9
C
131 142Right-handed alpha
Helix 19
AC1
C
145 160Right-handed alpha
Helix 20
AC2
C
168 175Right-handed alpha
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There are 5 sheets in PDB entry 7EMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
65 75anti-parallel
Strand 4
A
85 99anti-parallel
Strand 5
A
121 123anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
65 75anti-parallel
Strand 4
A
85 99anti-parallel
Strand 5
A
108 117anti-parallel
Strand 6
A
4 8anti-parallel
Strand 7
A
178 181parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
65 75anti-parallel
Strand 4
B
85 101anti-parallel
Strand 5
B
121 123anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
65 75anti-parallel
Strand 4
B
85 101anti-parallel
Strand 5
B
106 117anti-parallel
Strand 6
B
4 8anti-parallel
Strand 7
B
178 181parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
52 59anti-parallel
Strand 3
C
65 75anti-parallel
Strand 4
C
85 101anti-parallel
Strand 5
C
106 123anti-parallel
Strand 6
C
4 8anti-parallel
Strand 7
C
178 181parallel
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