Analysis of interatomic Contacts of Structural Units in PDB entry:
7EPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EPD entry

There are 2 chains in PDB entry 7EPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23PHE 819
B
 HIS 41PHE 721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7EPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 74Right-handed alpha
Helix 2
AA2
A
95 108Right-handed alpha
Helix 3
AA3
A
145 156Right-handed alpha
Helix 4
AA4
A
169 174Right-handed 310
Helix 5
AA5
A
187 189Right-handed 310
Helix 6
AA6
A
190 202Right-handed alpha
Helix 7
AA7
A
214 232Right-handed alpha
Helix 8
AA8
A
246 259Right-handed alpha
Helix 9
AA9
A
271 285Right-handed alpha
Helix 10
AB1
A
295 298Right-handed 310
Helix 11
AB2
A
324 333Right-handed alpha
Helix 12
AB3
A
342 353Right-handed alpha
Helix 13
AB4
A
377 400Right-handed alpha
Helix 14
AB5
A
416 421Right-handed alpha
Helix 15
AB6
A
564 592Right-handed alpha
Helix 16
AB7
A
595 600Right-handed alpha
Helix 17
AB8
A
602 623Right-handed alpha
Helix 18
AB9
A
628 661Right-handed alpha
Helix 19
AC1
A
676 701Right-handed alpha
Helix 20
AC2
A
726 747Right-handed alpha
Helix 21
AC3
A
755 783Right-handed alpha
Helix 22
AC4
A
784 786Right-handed 310
Helix 23
AC5
A
788 817Right-handed alpha
Helix 24
AC6
B
72 77Right-handed alpha
Helix 25
AC7
B
78 90Right-handed alpha
Helix 26
AC8
B
113 128Right-handed alpha
Helix 27
AC9
B
158 172Right-handed alpha
Helix 28
AD1
B
183 187Right-handed 310
Helix 29
AD2
B
201 215Right-handed alpha
Helix 30
AD3
B
229 245Right-handed alpha
Helix 31
AD4
B
264 277Right-handed alpha
Helix 32
AD5
B
288 303Right-handed alpha
Helix 33
AD6
B
343 350Right-handed alpha
Helix 34
AD7
B
366 371Right-handed 310
Helix 35
AD8
B
394 400Right-handed alpha
Helix 36
AD9
B
408 430Right-handed alpha
Helix 37
AE1
B
437 441Right-handed 310
Helix 38
AE2
B
444 454Right-handed alpha
Helix 39
AE3
B
505 509Right-handed 310
Helix 40
AE4
B
591 600Right-handed alpha
Helix 41
AE5
B
600 613Right-handed alpha
Helix 42
AE6
B
618 624Right-handed alpha
Helix 43
AE7
B
625 646Right-handed alpha
Helix 44
AE8
B
654 659Right-handed alpha
Helix 45
AE9
B
660 684Right-handed alpha
Helix 46
AF1
B
699 722Right-handed alpha
Helix 47
AF2
B
752 778Right-handed alpha
Helix 48
AF3
B
785 809Right-handed alpha
Helix 49
AF4
B
816 819Right-handed 310
Helix 50
AF5
B
820 841Right-handed alpha
Helix 51
AF6
B
841 850Right-handed alpha
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There are 6 sheets in PDB entry 7EPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
34 37parallel
Strand 4
A
139 141parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
208 212parallel
Strand 3
A
265 268parallel
Strand 4
A
290 293parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
467 473anti-parallel
Strand 4
A
479 480anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
49 55parallel
Strand 4
B
150 153parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 256first strand
Strand 2
B
220 226parallel
Strand 3
B
282 285parallel
Strand 4
B
309 312parallel
Strand 5
B
334 338parallel
Strand 6
B
477 481anti-parallel
Strand 7
B
494 498anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 555first strand
Strand 2
B
559 561anti-parallel
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