Analysis of interatomic Contacts of Structural Units in PDB entry:
7EPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EPF entry

There is 1 chain in PDB entry 7EPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 564VAL 825
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7EPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
565 567Right-handed 310
Helix 2
AA2
A
568 592Right-handed alpha
Helix 3
AA3
A
595 601Right-handed alpha
Helix 4
AA4
A
602 625Right-handed alpha
Helix 5
AA5
A
628 662Right-handed alpha
Helix 6
AA6
A
1012 1029Right-handed alpha
Helix 7
AA7
A
1070 1076Right-handed alpha
Helix 8
AA8
A
1077 1080Right-handed 310
Helix 9
AA9
A
1101 1115Right-handed alpha
Helix 10
AB1
A
1128 1131Right-handed 310
Helix 11
AB2
A
1132 1145Right-handed alpha
Helix 12
AB3
A
675 701Right-handed alpha
Helix 13
AB4
A
728 750Right-handed alpha
Helix 14
AB5
A
753 783Right-handed alpha
Helix 15
AB6
A
786 809Right-handed alpha
Helix 16
AB7
A
809 820Right-handed alpha
Helix 17
AB8
A
821 824Right-handed 310
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There are 3 sheets in PDB entry 7EPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1036first strand
Strand 2
A
1002 1008parallel
Strand 3
A
1051 1056parallel
Strand 4
A
1086 1093parallel
Strand 5
A
1117 1118parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1036first strand
Strand 2
A
1002 1008parallel
Strand 3
A
1051 1056parallel
Strand 4
A
1086 1093parallel
Strand 5
A
1123 1126parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1059first strand
Strand 2
A
1065 1066anti-parallel
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