Analysis of interatomic Contacts of Structural Units in PDB entry:
7EPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EPZ entry

There are 2 chains in PDB entry 7EPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 164ALA 631
B
 THR 45GLU 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 7EPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 207Right-handed alpha
Helix 2
AA2
A
231 236Right-handed alpha
Helix 3
AA3
A
243 247Right-handed 310
Helix 4
AA4
A
248 256Right-handed alpha
Helix 5
AA5
A
287 301Right-handed alpha
Helix 6
AA6
A
324 342Right-handed alpha
Helix 7
AA7
A
351 354Right-handed 310
Helix 8
AA8
A
356 372Right-handed alpha
Helix 9
AA9
A
385 393Right-handed alpha
Helix 10
AB1
A
412 428Right-handed alpha
Helix 11
AB2
A
450 460Right-handed alpha
Helix 12
AB3
A
519 534Right-handed alpha
Helix 13
AB4
B
46 58Right-handed alpha
Helix 14
AB5
B
60 72Right-handed alpha
Helix 15
AB6
B
75 105Right-handed alpha
Helix 16
AB7
B
110 115Right-handed alpha
Helix 17
AB8
B
121 133Right-handed alpha
Helix 18
AB9
B
133 149Right-handed alpha
Helix 19
AC1
B
151 155Right-handed 310
Helix 20
AC2
B
161 182Right-handed alpha
Helix 21
AC3
B
183 207Right-handed alpha
Helix 22
AC4
B
234 244Right-handed alpha
Helix 23
AC5
B
245 247Right-handed 310
Helix 24
AC6
B
248 252Right-handed 310
Helix 25
AC7
B
264 290Right-handed alpha
Helix 26
AC8
B
302 309Right-handed alpha
Helix 27
AC9
B
318 333Right-handed alpha
Helix 28
AD1
B
338 347Right-handed alpha
Helix 29
AD2
B
365 382Right-handed alpha
Helix 30
AD3
B
384 413Right-handed alpha
Helix 31
AD4
B
425 442Right-handed alpha
Helix 32
AD5
B
446 459Right-handed alpha
Helix 33
AD6
B
460 464Right-handed 310
Helix 34
AD7
B
477 493Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7EPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
376 380parallel
Strand 3
A
345 349parallel
Strand 4
A
306 308parallel
Strand 5
A
261 262parallel
Strand 6
A
225 228parallel
Strand 7
A
463 468parallel
Strand 8
A
432 434parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
277 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
610 611anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
494 495anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il