Analysis of interatomic Contacts of Structural Units in PDB entry:
7EWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EWQ entry

There are 2 chains in PDB entry 7EWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 374
B
 U 20 U 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7EWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
19 21Right-handed 310
Helix 3
AA3
A
44 61Right-handed alpha
Helix 4
AA4
A
65 77Right-handed alpha
Helix 5
AA5
A
83 92Right-handed alpha
Helix 6
AA6
A
123 134Right-handed alpha
Helix 7
AA7
A
141 145Right-handed 310
Helix 8
AA8
A
150 155Right-handed alpha
Helix 9
AA9
A
159 180Right-handed alpha
Helix 10
AB1
A
189 202Right-handed alpha
Helix 11
AB2
A
206 210Right-handed 310
Helix 12
AB3
A
212 225Right-handed alpha
Helix 13
AB4
A
227 241Right-handed alpha
Helix 14
AB5
A
248 262Right-handed alpha
Helix 15
AB6
A
266 277Right-handed alpha
Helix 16
AB7
A
282 287Right-handed alpha
Helix 17
AB8
A
289 307Right-handed alpha
Helix 18
AB9
A
308 311Right-handed 310
Helix 19
AC1
A
312 317Right-handed alpha
Helix 20
AC2
A
318 323Right-handed 310
Helix 21
AC3
A
325 328Right-handed 310
Helix 22
AC4
A
329 344Right-handed alpha
Helix 23
AC5
A
345 350Right-handed 310
Helix 24
AC6
A
358 374Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7EWQ.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
100 107parallel
Strand 3
A
114 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il