Analysis of interatomic Contacts of Structural Units in PDB entry:
7EYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7EYU entry

There are 2 chains in PDB entry 7EYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 4LYS 268
A
 PRO 4LEU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7EYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 26Right-handed alpha
Helix 2
AA2
B
35 46Right-handed alpha
Helix 3
AA3
B
46 53Right-handed alpha
Helix 4
AA4
B
75 80Right-handed alpha
Helix 5
AA5
B
80 86Right-handed alpha
Helix 6
AA6
B
87 89Right-handed 310
Helix 7
AA7
B
90 106Right-handed alpha
Helix 8
AA8
B
131 139Right-handed 310
Helix 9
AA9
B
170 174Right-handed 310
Helix 10
AB1
B
182 186Right-handed 310
Helix 11
AB2
B
238 244Right-handed alpha
Helix 12
AB3
B
246 253Right-handed alpha
Helix 13
AB4
A
14 26Right-handed alpha
Helix 14
AB5
A
35 51Right-handed alpha
Helix 15
AB6
A
75 80Right-handed alpha
Helix 16
AB7
A
80 86Right-handed alpha
Helix 17
AB8
A
87 89Right-handed 310
Helix 18
AB9
A
90 102Right-handed alpha
Helix 19
AC1
A
129 138Right-handed 310
Helix 20
AC2
A
170 174Right-handed 310
Helix 21
AC3
A
182 186Right-handed 310
Helix 22
AC4
A
238 243Right-handed alpha
Helix 23
AC5
A
246 253Right-handed alpha
Helix 24
AC6
A
273 278Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7EYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
28 30parallel
Strand 3
B
196 200anti-parallel
Strand 4
B
149 154anti-parallel
Strand 5
B
216 225anti-parallel
Strand 6
B
115 118anti-parallel
Strand 7
B
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
28 30parallel
Strand 3
B
196 200anti-parallel
Strand 4
B
149 154anti-parallel
Strand 5
B
216 225anti-parallel
Strand 6
B
108 112anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
204 206anti-parallel
Strand 3
B
166 167anti-parallel
Strand 4
B
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
28 30parallel
Strand 3
A
196 200anti-parallel
Strand 4
A
149 154anti-parallel
Strand 5
A
216 225anti-parallel
Strand 6
A
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
28 30parallel
Strand 3
A
196 200anti-parallel
Strand 4
A
149 154anti-parallel
Strand 5
A
216 225anti-parallel
Strand 6
A
115 118anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
165 167anti-parallel
Strand 3
A
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
265 266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il