Analysis of interatomic Contacts of Structural Units in PDB entry:
7F00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F00 entry

There are 2 chains in PDB entry 7F00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3TYR 488
B
 GLN 4GLN 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 7F00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 26Right-handed alpha
Helix 2
AA2
A
41 48Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
76 78Right-handed 310
Helix 5
AA5
A
90 105Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
149 154Right-handed alpha
Helix 8
AA8
A
158 162Right-handed 310
Helix 9
AA9
A
182 197Right-handed alpha
Helix 10
AB1
A
218 228Right-handed alpha
Helix 11
AB2
A
238 246Right-handed alpha
Helix 12
AB3
A
253 271Right-handed alpha
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
285 290Right-handed 310
Helix 15
AB6
A
292 317Right-handed alpha
Helix 16
AB7
A
321 336Right-handed alpha
Helix 17
AB8
A
338 341Right-handed 310
Helix 18
AB9
A
342 356Right-handed alpha
Helix 19
AC1
A
379 393Right-handed alpha
Helix 20
AC2
A
403 417Right-handed alpha
Helix 21
AC3
A
426 438Right-handed alpha
Helix 22
AC4
A
441 450Right-handed alpha
Helix 23
AC5
A
451 455Right-handed 310
Helix 24
AC6
A
466 476Right-handed alpha
Helix 25
AC7
B
7 26Right-handed alpha
Helix 26
AC8
B
41 48Right-handed alpha
Helix 27
AC9
B
54 62Right-handed alpha
Helix 28
AD1
B
91 106Right-handed alpha
Helix 29
AD2
B
122 133Right-handed alpha
Helix 30
AD3
B
149 154Right-handed alpha
Helix 31
AD4
B
158 162Right-handed 310
Helix 32
AD5
B
182 197Right-handed alpha
Helix 33
AD6
B
218 228Right-handed alpha
Helix 34
AD7
B
238 246Right-handed alpha
Helix 35
AD8
B
253 271Right-handed alpha
Helix 36
AD9
B
277 282Right-handed alpha
Helix 37
AE1
B
285 290Right-handed 310
Helix 38
AE2
B
292 317Right-handed alpha
Helix 39
AE3
B
321 335Right-handed alpha
Helix 40
AE4
B
338 341Right-handed 310
Helix 41
AE5
B
342 355Right-handed alpha
Helix 42
AE6
B
379 394Right-handed alpha
Helix 43
AE7
B
404 417Right-handed alpha
Helix 44
AE8
B
426 439Right-handed alpha
Helix 45
AE9
B
441 450Right-handed alpha
Helix 46
AF1
B
451 455Right-handed 310
Helix 47
AF2
B
466 476Right-handed alpha
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There are 6 sheets in PDB entry 7F00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
109 115parallel
Strand 3
A
67 74parallel
Strand 4
A
171 175parallel
Strand 5
A
30 34parallel
Strand 6
A
202 206parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
250 252anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 373first strand
Strand 2
A
359 363anti-parallel
Strand 3
A
458 461anti-parallel
Strand 4
A
479 482parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
109 115parallel
Strand 3
B
67 74parallel
Strand 4
B
171 175parallel
Strand 5
B
30 34parallel
Strand 6
B
202 206parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
250 252anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
360 363anti-parallel
Strand 3
B
458 461anti-parallel
Strand 4
B
479 482parallel
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