Analysis of interatomic Contacts of Structural Units in PDB entry:
7F08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F08 entry

There are 8 chains in PDB entry 7F08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 14	VAL 390
D	PRO 14	VAL 390
F	PRO 14	VAL 390
H	ARG 12	VAL 390
J	ARG 13	VAL 391
L	PRO 14	VAL 390
N	ARG 12	VAL 391
P	PRO 14	VAL 391

There are107 helices in PDB entry 7F08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	36	45	Right-handed alpha
Helix 2	AA2	B	50	65	Right-handed alpha
Helix 3	AA3	B	74	81	Right-handed alpha
Helix 4	AA4	B	82	86	Right-handed 310
Helix 5	AA5	B	91	119	Right-handed alpha
Helix 6	AA6	B	121	125	Right-handed 310
Helix 7	AA7	B	140	150	Right-handed alpha
Helix 8	AA8	B	166	181	Right-handed alpha
Helix 9	AA9	B	206	216	Right-handed alpha
Helix 10	AB1	B	271	289	Right-handed alpha
Helix 11	AB2	B	290	292	Right-handed 310
Helix 12	AB3	B	307	319	Right-handed alpha
Helix 13	AB4	B	325	336	Right-handed alpha
Helix 14	AB5	B	340	357	Right-handed alpha
Helix 15	AB6	D	36	45	Right-handed alpha
Helix 16	AB7	D	50	63	Right-handed alpha
Helix 17	AB8	D	74	81	Right-handed alpha
Helix 18	AB9	D	91	119	Right-handed alpha
Helix 19	AC1	D	121	125	Right-handed 310
Helix 20	AC2	D	140	150	Right-handed alpha
Helix 21	AC3	D	166	182	Right-handed alpha
Helix 22	AC4	D	206	216	Right-handed alpha
Helix 23	AC5	D	271	289	Right-handed alpha
Helix 24	AC6	D	307	319	Right-handed alpha
Helix 25	AC7	D	325	336	Right-handed alpha
Helix 26	AC8	D	340	357	Right-handed alpha
Helix 27	AC9	F	36	45	Right-handed alpha
Helix 28	AD1	F	50	63	Right-handed alpha
Helix 29	AD2	F	74	81	Right-handed alpha
Helix 30	AD3	F	91	119	Right-handed alpha
Helix 31	AD4	F	121	125	Right-handed 310
Helix 32	AD5	F	140	150	Right-handed alpha
Helix 33	AD6	F	166	182	Right-handed alpha
Helix 34	AD7	F	206	216	Right-handed alpha
Helix 35	AD8	F	271	289	Right-handed alpha
Helix 36	AD9	F	307	319	Right-handed alpha
Helix 37	AE1	F	325	336	Right-handed alpha
Helix 38	AE2	F	340	357	Right-handed alpha
Helix 39	AE3	H	36	45	Right-handed alpha
Helix 40	AE4	H	50	64	Right-handed alpha
Helix 41	AE5	H	74	81	Right-handed alpha
Helix 42	AE6	H	91	119	Right-handed alpha
Helix 43	AE7	H	121	125	Right-handed 310
Helix 44	AE8	H	140	150	Right-handed alpha
Helix 45	AE9	H	166	182	Right-handed alpha
Helix 46	AF1	H	194	198	Right-handed 310
Helix 47	AF2	H	206	216	Right-handed alpha
Helix 48	AF3	H	271	289	Right-handed alpha
Helix 49	AF4	H	307	319	Right-handed alpha
Helix 50	AF5	H	325	336	Right-handed alpha
Helix 51	AF6	H	340	357	Right-handed alpha
Helix 52	AF7	J	36	45	Right-handed alpha
Helix 53	AF8	J	50	64	Right-handed alpha
Helix 54	AF9	J	74	81	Right-handed alpha
Helix 55	AG1	J	82	86	Right-handed 310
Helix 56	AG2	J	91	119	Right-handed alpha
Helix 57	AG3	J	121	125	Right-handed 310
Helix 58	AG4	J	140	150	Right-handed alpha
Helix 59	AG5	J	166	182	Right-handed alpha
Helix 60	AG6	J	206	216	Right-handed alpha
Helix 61	AG7	J	271	289	Right-handed alpha
Helix 62	AG8	J	290	292	Right-handed 310
Helix 63	AG9	J	307	319	Right-handed alpha
Helix 64	AH1	J	325	336	Right-handed alpha
Helix 65	AH2	J	340	357	Right-handed alpha
Helix 66	AH3	L	36	45	Right-handed alpha
Helix 67	AH4	L	50	65	Right-handed alpha
Helix 68	AH5	L	74	81	Right-handed alpha
Helix 69	AH6	L	82	86	Right-handed 310
Helix 70	AH7	L	91	119	Right-handed alpha
Helix 71	AH8	L	121	125	Right-handed 310
Helix 72	AH9	L	140	150	Right-handed alpha
Helix 73	AI1	L	166	181	Right-handed alpha
Helix 74	AI2	L	206	216	Right-handed alpha
Helix 75	AI3	L	271	289	Right-handed alpha
Helix 76	AI4	L	290	292	Right-handed 310
Helix 77	AI5	L	307	319	Right-handed alpha
Helix 78	AI6	L	325	336	Right-handed alpha
Helix 79	AI7	L	340	357	Right-handed alpha
Helix 80	AI8	N	36	45	Right-handed alpha
Helix 81	AI9	N	50	64	Right-handed alpha
Helix 82	AJ1	N	74	81	Right-handed alpha
Helix 83	AJ2	N	91	119	Right-handed alpha
Helix 84	AJ3	N	121	125	Right-handed 310
Helix 85	AJ4	N	140	150	Right-handed alpha
Helix 86	AJ5	N	166	182	Right-handed alpha
Helix 87	AJ6	N	206	216	Right-handed alpha
Helix 88	AJ7	N	271	289	Right-handed alpha
Helix 89	AJ8	N	307	319	Right-handed alpha
Helix 90	AJ9	N	321	324	Right-handed 310
Helix 91	AK1	N	325	336	Right-handed alpha
Helix 92	AK2	N	338	340	Right-handed 310
Helix 93	AK3	N	341	357	Right-handed alpha
Helix 94	AK4	P	36	45	Right-handed alpha
Helix 95	AK5	P	50	65	Right-handed alpha
Helix 96	AK6	P	74	81	Right-handed alpha
Helix 97	AK7	P	82	86	Right-handed 310
Helix 98	AK8	P	91	119	Right-handed alpha
Helix 99	AK9	P	121	125	Right-handed 310
Helix 100	AL1	P	140	150	Right-handed alpha
Helix 101	AL2	P	166	182	Right-handed alpha
Helix 102	AL3	P	206	216	Right-handed alpha
Helix 103	AL4	P	271	289	Right-handed alpha
Helix 104	AL5	P	290	292	Right-handed 310
Helix 105	AL6	P	307	319	Right-handed alpha
Helix 106	AL7	P	325	336	Right-handed alpha
Helix 107	AL8	P	340	357	Right-handed alpha

There are 32 sheets in PDB entry 7F08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	161	first strand
Strand 2	B	127	132	parallel
Strand 3	B	186	193	parallel
Strand 4	B	219	227	anti-parallel
Strand 5	B	18	26	anti-parallel
Strand 6	B	238	247	anti-parallel
Strand 7	B	379	387	anti-parallel
Strand 8	B	368	375	anti-parallel
Strand 9	B	300	303	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	68	70	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	J	255	260	anti-parallel
Strand 3	J	263	264	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	J	255	260	anti-parallel
Strand 3	J	267	268	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	255	260	anti-parallel
Strand 3	B	267	268	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	255	260	anti-parallel
Strand 3	J	137	138	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	161	first strand
Strand 2	D	127	132	parallel
Strand 3	D	186	193	parallel
Strand 4	D	219	226	anti-parallel
Strand 5	D	19	26	anti-parallel
Strand 6	D	238	247	anti-parallel
Strand 7	D	379	387	anti-parallel
Strand 8	D	368	375	anti-parallel
Strand 9	D	300	303	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	68	71	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	267	268	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	263	264	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	161	first strand
Strand 2	F	127	132	parallel
Strand 3	F	187	193	parallel
Strand 4	F	219	226	anti-parallel
Strand 5	F	19	26	anti-parallel
Strand 6	F	238	247	anti-parallel
Strand 7	F	379	387	anti-parallel
Strand 8	F	368	375	anti-parallel
Strand 9	F	300	303	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	68	70	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	P	255	260	anti-parallel
Strand 3	P	263	264	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	138	first strand
Strand 2	P	255	260	anti-parallel
Strand 3	P	267	268	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	264	first strand
Strand 2	F	255	260	anti-parallel
Strand 3	F	267	268	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	264	first strand
Strand 2	F	255	260	anti-parallel
Strand 3	P	137	138	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	161	first strand
Strand 2	H	127	132	parallel
Strand 3	H	187	193	parallel
Strand 4	H	219	227	anti-parallel
Strand 5	H	18	26	anti-parallel
Strand 6	H	238	247	anti-parallel
Strand 7	H	379	387	anti-parallel
Strand 8	H	368	375	anti-parallel
Strand 9	H	300	303	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	33	first strand
Strand 2	H	68	70	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	138	first strand
Strand 2	N	255	260	anti-parallel
Strand 3	N	263	264	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	138	first strand
Strand 2	N	255	260	anti-parallel
Strand 3	N	267	268	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	264	first strand
Strand 2	H	255	260	anti-parallel
Strand 3	H	267	268	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	264	first strand
Strand 2	H	255	260	anti-parallel
Strand 3	N	137	138	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	161	first strand
Strand 2	J	127	132	parallel
Strand 3	J	187	193	parallel
Strand 4	J	219	226	anti-parallel
Strand 5	J	18	26	anti-parallel
Strand 6	J	238	247	anti-parallel
Strand 7	J	379	387	anti-parallel
Strand 8	J	368	375	anti-parallel
Strand 9	J	300	303	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	33	first strand
Strand 2	J	68	70	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	161	first strand
Strand 2	L	127	132	parallel
Strand 3	L	187	193	parallel
Strand 4	L	219	227	anti-parallel
Strand 5	L	18	26	anti-parallel
Strand 6	L	238	247	anti-parallel
Strand 7	L	379	387	anti-parallel
Strand 8	L	368	375	anti-parallel
Strand 9	L	300	303	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	33	first strand
Strand 2	L	68	70	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	255	256	first strand
Strand 2	L	267	268	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	259	260	first strand
Strand 2	L	263	264	anti-parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	161	first strand
Strand 2	N	127	132	parallel
Strand 3	N	186	193	parallel
Strand 4	N	219	227	anti-parallel
Strand 5	N	18	26	anti-parallel
Strand 6	N	238	247	anti-parallel
Strand 7	N	379	387	anti-parallel
Strand 8	N	368	375	anti-parallel
Strand 9	N	300	303	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	31	33	first strand
Strand 2	N	68	70	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	156	161	first strand
Strand 2	P	127	132	parallel
Strand 3	P	186	193	parallel
Strand 4	P	219	227	anti-parallel
Strand 5	P	18	26	anti-parallel
Strand 6	P	238	247	anti-parallel
Strand 7	P	379	387	anti-parallel
Strand 8	P	368	375	anti-parallel
Strand 9	P	300	303	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	31	33	first strand
Strand 2	P	68	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F08

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F08