Analysis of interatomic Contacts of Structural Units in PDB entry:
7F0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F0D entry

There are 31 chains in PDB entry 7F0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 2	PHE 54
1	VAL 7	THR 54
2	GLY 4	LEU 45
3	PRO 2	ASN 63
4	VAL 1	GLY 37
6	MET 1	TYR 45
A	A 5	U 3132
B	U 1	A 115
C	ALA 2	ARG 273
D	ALA 2	ARG 214
E	LEU 9	THR 215
F	LYS 12	GLY 181
G	ARG 3	LYS 176
H	MET 1	ALA 47
J	PRO 2	GLN 147
K	ILE 2	LEU 122
L	LYS 4	GLU 145
M	LEU 2	GLU 135
N	PRO 2	ARG 117
O	ALA 7	PHE 122
P	MET 1	LYS 112
Q	ALA 2	ALA 123
R	TYR 5	GLY 102
S	GLU 9	PRO 121
T	THR 3	ALA 100
U	MET 1	ASP 104
V	SER 6	ALA 182
W	ASN 12	THR 85
X	MET 1	ARG 63
Y	GLY 4	LEU 68
Z	SER 2	GLN 60

There are 68 helices in PDB entry 7F0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	9	18	Right-handed alpha
Helix 2	AA2	0	43	50	Right-handed alpha
Helix 3	AA3	2	11	20	Right-handed alpha
Helix 4	AA4	2	20	25	Right-handed alpha
Helix 5	AA5	2	28	40	Right-handed alpha
Helix 6	AA6	3	7	12	Right-handed alpha
Helix 7	AA7	3	38	43	Right-handed alpha
Helix 8	AA8	3	51	53	Right-handed 310
Helix 9	AA9	3	54	62	Right-handed alpha
Helix 10	AB1	C	30	32	Right-handed 310
Helix 11	AB2	C	134	136	Right-handed 310
Helix 12	AB3	C	208	216	Right-handed alpha
Helix 13	AB4	D	58	62	Right-handed 310
Helix 14	AB5	D	63	74	Right-handed alpha
Helix 15	AB6	D	102	106	Right-handed 310
Helix 16	AB7	E	27	32	Right-handed alpha
Helix 17	AB8	E	36	52	Right-handed alpha
Helix 18	AB9	E	109	128	Right-handed alpha
Helix 19	AC1	E	143	155	Right-handed alpha
Helix 20	AC2	E	190	197	Right-handed alpha
Helix 21	AC3	E	203	215	Right-handed alpha
Helix 22	AC4	F	13	26	Right-handed alpha
Helix 23	AC5	F	55	68	Right-handed alpha
Helix 24	AC6	F	99	108	Right-handed alpha
Helix 25	AC7	F	169	181	Right-handed alpha
Helix 26	AC8	G	61	81	Right-handed alpha
Helix 27	AC9	G	138	150	Right-handed alpha
Helix 28	AD1	J	24	38	Right-handed alpha
Helix 29	AD2	J	58	62	Right-handed 310
Helix 30	AD3	J	65	70	Right-handed alpha
Helix 31	AD4	J	88	94	Right-handed alpha
Helix 32	AD5	J	96	109	Right-handed alpha
Helix 33	AD6	J	112	120	Right-handed alpha
Helix 34	AD7	L	78	84	Right-handed alpha
Helix 35	AD8	L	93	101	Right-handed alpha
Helix 36	AD9	L	129	139	Right-handed alpha
Helix 37	AE1	M	44	58	Right-handed alpha
Helix 38	AE2	M	111	125	Right-handed alpha
Helix 39	AE3	N	13	32	Right-handed alpha
Helix 40	AE4	N	38	58	Right-handed alpha
Helix 41	AE5	N	59	67	Right-handed alpha
Helix 42	AE6	N	72	80	Right-handed alpha
Helix 43	AE7	N	82	87	Right-handed alpha
Helix 44	AE8	O	9	21	Right-handed alpha
Helix 45	AE9	O	71	90	Right-handed alpha
Helix 46	AF1	O	106	118	Right-handed alpha
Helix 47	AF2	P	2	9	Right-handed alpha
Helix 48	AF3	P	10	12	Right-handed 310
Helix 49	AF4	Q	6	20	Right-handed alpha
Helix 50	AF5	Q	31	72	Right-handed alpha
Helix 51	AF6	Q	75	86	Right-handed alpha
Helix 52	AF7	Q	91	102	Right-handed alpha
Helix 53	AF8	Q	102	116	Right-handed alpha
Helix 54	AF9	R	52	57	Right-handed alpha
Helix 55	AG1	S	23	32	Right-handed alpha
Helix 56	AG2	S	38	47	Right-handed alpha
Helix 57	AG3	S	53	73	Right-handed alpha
Helix 58	AG4	S	75	77	Right-handed 310
Helix 59	AG5	T	6	9	Right-handed 310
Helix 60	AG6	T	18	23	Right-handed alpha
Helix 61	AG7	T	24	26	Right-handed 310
Helix 62	AG8	T	38	50	Right-handed alpha
Helix 63	AG9	V	18	28	Right-handed alpha
Helix 64	AH1	Y	8	13	Right-handed alpha
Helix 65	AH2	Y	15	38	Right-handed alpha
Helix 66	AH3	Y	45	66	Right-handed alpha
Helix 67	AH4	Z	16	27	Right-handed alpha
Helix 68	AH5	Z	42	50	Right-handed alpha

There are 42 sheets in PDB entry 7F0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	10	11	first strand
Strand 2	1	25	26	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	14	15	first strand
Strand 2	1	51	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	23	25	first strand
Strand 2	3	47	49	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	23	24	first strand
Strand 2	4	35	36	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	60	63	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	102	106	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	190	191	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	182	185	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	207	210	anti-parallel
Strand 3	D	111	117	anti-parallel
Strand 4	D	174	181	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	17	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	192	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	100	101	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	49	54	anti-parallel
Strand 3	D	80	85	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	168	169	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	24	25	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	199	201	parallel
Strand 3	E	160	163	parallel
Strand 4	E	181	184	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	41	first strand
Strand 2	F	162	165	anti-parallel
Strand 3	F	135	136	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	45	first strand
Strand 2	F	94	96	anti-parallel
Strand 3	F	73	74	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	45	first strand
Strand 2	G	51	54	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	88	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	123	128	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	106	first strand
Strand 2	G	114	116	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	138	139	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	20	first strand
Strand 2	K	38	45	anti-parallel
Strand 3	K	58	64	anti-parallel
Strand 4	K	83	85	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	70	first strand
Strand 2	K	76	79	anti-parallel
Strand 3	P	68	74	anti-parallel
Strand 4	P	57	63	anti-parallel
Strand 5	P	39	50	anti-parallel
Strand 6	P	24	30	anti-parallel
Strand 7	P	80	87	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	77	first strand
Strand 2	L	109	111	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	64	65	first strand
Strand 2	M	102	106	anti-parallel
Strand 3	M	33	36	anti-parallel
Strand 4	M	129	130	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	43	first strand
Strand 2	M	90	97	anti-parallel
Strand 3	M	72	75	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	110	115	anti-parallel
Strand 3	N	95	99	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	55	59	first strand
Strand 2	O	43	46	anti-parallel
Strand 3	O	32	36	anti-parallel
Strand 4	O	96	97	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	13	17	first strand
Strand 2	R	6	10	anti-parallel
Strand 3	R	35	44	anti-parallel
Strand 4	R	60	66	anti-parallel
Strand 5	R	96	98	anti-parallel
Strand 6	R	23	25	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	13	17	first strand
Strand 2	R	6	10	anti-parallel
Strand 3	R	35	44	anti-parallel
Strand 4	R	49	50	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	76	79	first strand
Strand 2	R	86	89	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	20	first strand
Strand 2	S	111	119	anti-parallel
Strand 3	S	79	88	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	94	97	first strand
Strand 2	S	103	106	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	28	33	anti-parallel
Strand 3	T	81	86	anti-parallel
Strand 4	T	54	60	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	66	67	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	20	27	anti-parallel
Strand 4	U	8	11	anti-parallel
Strand 5	U	71	73	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	12	13	first strand
Strand 2	V	43	46	anti-parallel
Strand 3	V	30	35	anti-parallel
Strand 4	V	94	96	parallel
Strand 5	V	75	80	anti-parallel
Strand 6	V	64	66	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	104	108	first strand
Strand 2	V	129	133	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	120	124	first strand
Strand 2	V	177	181	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	30	31	first strand
Strand 2	W	65	66	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	17	18	first strand
Strand 2	X	24	25	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	34	36	first strand
Strand 2	X	49	51	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	34	37	first strand
Strand 2	Z	4	8	anti-parallel
Strand 3	Z	54	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F0D