Analysis of interatomic Contacts of Structural Units in PDB entry:
7F0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F0M entry

There are 4 chains in PDB entry 7F0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	GLU 163
B	LYS 6	GLU 163
C	LYS 6	GLU 163
D	LYS 6	GLU 163

There are 16 helices in PDB entry 7F0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	98	Right-handed alpha
Helix 2	AA2	A	102	111	Right-handed alpha
Helix 3	AA3	A	113	119	Right-handed 310
Helix 4	AA4	A	131	141	Right-handed alpha
Helix 5	AA5	B	81	98	Right-handed alpha
Helix 6	AA6	B	102	111	Right-handed alpha
Helix 7	AA7	B	113	119	Right-handed 310
Helix 8	AA8	B	131	141	Right-handed alpha
Helix 9	AA9	C	81	98	Right-handed alpha
Helix 10	AB1	C	102	111	Right-handed alpha
Helix 11	AB2	C	113	119	Right-handed 310
Helix 12	AB3	C	131	141	Right-handed alpha
Helix 13	AB4	D	81	98	Right-handed alpha
Helix 14	AB5	D	102	111	Right-handed alpha
Helix 15	AB6	D	113	119	Right-handed 310
Helix 16	AB7	D	131	141	Right-handed alpha

There are 8 sheets in PDB entry 7F0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	22	26	anti-parallel
Strand 3	A	32	33	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	55	62	anti-parallel
Strand 3	A	155	163	anti-parallel
Strand 4	A	150	152	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	22	26	anti-parallel
Strand 3	B	32	33	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	126	first strand
Strand 2	B	54	62	anti-parallel
Strand 3	B	156	163	anti-parallel
Strand 4	B	150	151	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	15	first strand
Strand 2	C	22	26	anti-parallel
Strand 3	C	32	33	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	125	first strand
Strand 2	C	55	62	anti-parallel
Strand 3	C	155	163	anti-parallel
Strand 4	C	150	152	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	22	26	anti-parallel
Strand 3	D	32	33	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	125	first strand
Strand 2	D	55	62	anti-parallel
Strand 3	D	155	163	anti-parallel
Strand 4	D	150	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F0M