Analysis of interatomic Contacts of Structural Units in PDB entry:
7F0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F0S entry

There is 1 chain in PDB entry 7F0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 111ARG 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7F0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 116Right-handed 310
Helix 2
AA2
A
117 132Right-handed alpha
Helix 3
AA3
A
192 205Right-handed alpha
Helix 4
AA4
A
215 232Right-handed alpha
Helix 5
AA5
A
237 244Right-handed alpha
Helix 6
AA6
A
249 258Right-handed alpha
Helix 7
AA7
A
262 273Right-handed alpha
Helix 8
AA8
A
282 285Right-handed 310
Helix 9
AA9
A
315 338Right-handed alpha
Helix 10
AB1
A
349 361Right-handed alpha
Helix 11
AB2
A
381 395Right-handed alpha
Helix 12
AB3
A
397 409Right-handed alpha
Helix 13
AB4
A
425 452Right-handed alpha
Helix 14
AB5
A
452 457Right-handed alpha
Helix 15
AB6
A
479 484Right-handed alpha
Helix 16
AB7
A
524 532Right-handed alpha
Helix 17
AB8
A
548 558Right-handed alpha
Helix 18
AB9
A
562 574Right-handed alpha
Helix 19
AC1
A
581 586Right-handed alpha
Helix 20
AC2
A
594 598Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 7F0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
309 311anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
461 464parallel
Strand 3
A
467 471anti-parallel
Strand 4
A
366 372anti-parallel
Strand 5
A
491 497anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 513first strand
Strand 2
A
518 523anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il