Analysis of interatomic Contacts of Structural Units in PDB entry:
7F0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F0X entry

There are 2 chains in PDB entry 7F0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 334GLU 516
B
GLU 1ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7F0X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
338 343Right-handed alpha
Helix 2
AA2
A
364 370Right-handed alpha
Helix 3
AA3
A
383 387Right-handed 310
Helix 4
AA4
A
405 410Right-handed 310
Helix 5
AA5
A
416 422Right-handed alpha
Helix 6
AA6
A
438 443Right-handed alpha
Helix 7
AA7
A
502 505Right-handed 310
Helix 8
AA8
B
28 32Right-handed 310
Helix 9
AA9
B
62 65Right-handed 310
Helix 10
AB1
B
214 218Right-handed 310
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There are 9 sheets in PDB entry 7F0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 359first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 6first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 11first strand
Strand 2
B
114 117parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
44 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 11first strand
Strand 2
B
114 117parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
107 110anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
139 140first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
205 210anti-parallel
Strand 4
B
197 202anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 148first strand
Strand 2
B
238 241parallel
Strand 3
B
219 225anti-parallel
Strand 4
B
168 173anti-parallel
Strand 5
B
179 184anti-parallel
Strand 6
B
188 189anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
145 148first strand
Strand 2
B
238 241parallel
Strand 3
B
219 225anti-parallel
Strand 4
B
232 233anti-parallel
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