Analysis of interatomic Contacts of Structural Units in PDB entry:
7F16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F16 entry

There are 6 chains in PDB entry 7F16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 31	SER 434
P	SER 1	LEU 34
A	ASP 11	LEU 394
B	GLU 3	ASN 340
G	THR 6	ARG 62
N	GLN 1	SER 128

There are 29 helices in PDB entry 7F16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	33	57	Right-handed alpha
Helix 2	AA2	R	128	169	Right-handed alpha
Helix 3	AA3	R	174	205	Right-handed alpha
Helix 4	AA4	R	233	267	Right-handed alpha
Helix 5	AA5	R	275	302	Right-handed alpha
Helix 6	AA6	R	315	347	Right-handed alpha
Helix 7	AA7	R	354	373	Right-handed alpha
Helix 8	AA8	R	373	381	Right-handed alpha
Helix 9	AA9	R	389	414	Right-handed alpha
Helix 10	AB1	R	417	434	Right-handed alpha
Helix 11	AB2	P	4	34	Right-handed alpha
Helix 12	AB3	A	12	40	Right-handed alpha
Helix 13	AB4	A	52	60	Right-handed alpha
Helix 14	AB5	A	233	240	Right-handed 310
Helix 15	AB6	A	265	278	Right-handed alpha
Helix 16	AB7	A	279	283	Right-handed 310
Helix 17	AB8	A	293	303	Right-handed alpha
Helix 18	AB9	A	306	312	Right-handed alpha
Helix 19	AC1	A	313	316	Right-handed 310
Helix 20	AC2	A	331	353	Right-handed alpha
Helix 21	AC3	A	369	391	Right-handed alpha
Helix 22	AC4	B	4	26	Right-handed alpha
Helix 23	AC5	B	29	34	Right-handed alpha
Helix 24	AC6	B	35	37	Right-handed 310
Helix 25	AC7	G	7	24	Right-handed alpha
Helix 26	AC8	G	29	44	Right-handed alpha
Helix 27	AC9	N	28	32	Right-handed 310
Helix 28	AD1	N	62	65	Right-handed 310
Helix 29	AD2	N	87	91	Right-handed 310

There are 11 sheets in PDB entry 7F16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	81	85	first strand
Strand 2	R	98	102	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F16

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F16